Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 0.0e+00 1287.7 654 100.0
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.2e-209 733.8 693 59.3
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.6e-209 732.6 693 59.2
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.0e-198 696.4 681 57.0
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.6e-195 686.8 685 55.9
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 3.1e-194 682.6 679 56.6
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.0e-194 682.2 692 56.1
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 8.9e-194 681.0 687 55.7
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.0e-193 679.9 699 54.8
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 9.2e-191 671.0 700 54.4
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 2.1e-190 669.8 697 54.1
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 9.9e-185 651.0 686 53.9
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 1.7e-184 650.2 700 53.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 1.1e-183 647.5 702 53.1
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 2.4e-183 646.4 687 54.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 3.5e-182 642.5 698 53.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 4.6e-182 642.1 700 53.0
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 6.0e-182 641.7 698 53.3
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 6.6e-181 638.3 694 53.9
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 5.6e-180 635.2 702 52.1
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.8e-179 632.9 710 53.2
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 5.2e-178 628.6 690 50.9
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 7.6e-177 624.8 692 51.7
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.7e-176 623.6 669 53.8
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 2.1e-174 616.7 681 51.2
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 2.7e-174 616.3 687 51.7
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 3.5e-174 615.9 696 52.2
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 3.5e-174 615.9 611 55.2
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.5e-172 609.8 693 50.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 4.3e-172 609.0 700 51.6
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 5.6e-172 608.6 693 50.2
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.3e-171 607.4 685 50.9
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 8.1e-171 604.7 698 50.4
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.4e-170 603.2 681 50.2
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 7.6e-169 598.2 658 51.4
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 9.9e-169 597.8 669 51.4
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 9.9e-169 597.8 692 49.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 6.4e-168 595.1 697 49.5
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 3.2e-167 592.8 698 49.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.6e-166 590.5 699 49.2
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.1e-166 590.1 685 49.6
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.7e-166 589.7 699 49.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 2.7e-166 589.7 659 50.7
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 6.0e-166 588.6 693 48.5
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 1.0e-165 587.8 699 49.2
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 1.8e-165 587.0 693 50.5
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.0e-165 586.3 699 49.1
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 3.0e-165 586.3 690 50.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-164 584.3 598 56.2
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 6.2e-163 578.6 695 49.2
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 2.4e-162 576.6 697 48.9
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 1.2e-161 574.3 682 50.4
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.2e-161 574.3 680 50.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.7e-160 570.5 681 48.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 2.1e-158 563.5 669 48.4
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 7.9e-158 561.6 683 49.6
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.1e-156 557.8 677 48.2
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.3e-152 544.3 660 48.3
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.4e-151 540.8 700 47.7
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.5e-145 520.8 682 45.9
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 3.4e-145 519.6 693 45.0
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 5.5e-143 512.3 679 45.9
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.0e-141 508.1 663 44.5
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 3.1e-138 496.5 674 45.3
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 6.1e-134 482.3 659 44.6
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 5.1e-133 479.2 678 44.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 8.8e-133 478.4 695 43.6
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 1.1e-132 478.0 677 44.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 6.3e-131 472.2 545 52.1
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 4.5e-129 466.1 681 44.9
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.2e-128 463.8 678 43.7
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.2e-126 458.0 671 44.3
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 2.7e-126 456.8 658 44.1
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 8.0e-126 455.3 674 44.1
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.8e-125 454.1 674 44.2
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 5.2e-125 452.6 667 43.3
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 8.8e-125 451.8 658 42.6
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.0e-124 450.7 658 43.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.8e-122 444.1 661 44.6
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.1e-119 434.9 664 41.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.2e-118 431.4 695 41.7
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.7e-118 430.3 661 43.7
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.8e-117 427.6 652 43.7
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.8e-117 427.6 652 43.7
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.4e-114 417.9 663 42.1
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 2.9e-112 410.2 683 41.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.0e-109 401.7 669 40.1
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 8.8e-109 398.7 675 40.3
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.5e-108 397.9 666 40.7
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 3.4e-108 396.7 668 40.6
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.8e-107 393.7 663 40.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 6.3e-107 392.5 668 38.9
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.6e-105 387.9 654 39.6
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.1e-103 381.7 663 39.1
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 6.8e-101 372.5 644 39.3
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.5e-100 371.3 673 38.9
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.8e-98 364.4 643 39.2
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 4.5e-97 359.8 640 38.9
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 8.6e-96 355.5 349 55.0
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.5e-92 344.7 680 35.9
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 9.8e-92 342.0 584 40.4
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 2.0e-89 334.3 653 34.5
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 8.1e-70 269.2 883 29.3
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 9.9e-44 182.6 333 32.4
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.9e-43 181.0 286 39.2
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 9.3e-42 176.0 178 51.7
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.0e-40 171.0 532 31.2
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 7.4e-39 166.4 333 31.5
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 7.1e-34 149.8 133 54.1
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.1e-31 142.5 519 29.7
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.3e-30 139.0 534 25.3
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 5.9e-28 130.2 106 58.5
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.1e-21 109.4 518 27.6
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 5.3e-21 107.1 543 27.6
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.5e-20 105.5 530 27.0
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 2.6e-20 104.8 540 26.9
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.6e-20 104.8 541 27.2
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 4.2e-18 97.4 517 27.9
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 4.2e-18 97.4 517 27.9
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 8.8e-16 89.7 537 25.9
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 2.8e-14 84.7 284 26.1
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 3.7e-14 84.3 545 24.4
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 6.3e-14 83.6 534 25.8
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.1e-13 82.8 191 33.0
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-13 82.8 171 35.7
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.4e-13 81.6 478 22.2
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-10 72.0 242 33.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-10 72.0 242 33.9


User provided reference genes

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