Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 0.0e+00 1142.9 572 100.0
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 9.7e-245 850.1 578 74.7
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.7e-233 812.8 578 69.0
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.6e-231 806.2 576 70.1
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 6.1e-231 804.3 578 69.6
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 2.3e-230 802.4 578 69.7
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 7.5e-229 797.3 577 69.7
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 8.2e-228 793.9 577 69.3
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.4e-227 792.3 577 68.1
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 3.2e-224 781.9 578 67.5
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 7.2e-224 780.8 578 67.6
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.6e-223 779.6 578 67.5
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 2.1e-223 779.2 577 69.2
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 2.7e-223 778.9 578 66.3
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.0e-222 776.9 578 68.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.8e-222 776.2 576 67.0
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.5e-221 773.1 578 66.3
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.0e-221 772.7 576 65.6
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 2.0e-221 772.7 578 67.0
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 7.5e-221 770.8 578 65.7
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.3e-220 770.0 580 67.1
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.1e-219 766.9 580 67.1
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.4e-219 766.5 579 67.0
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 1.4e-219 766.5 577 67.4
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.0e-217 760.4 578 66.6
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 3.8e-217 758.4 574 65.7
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 5.0e-217 758.1 585 65.5
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 5.5e-216 754.6 578 65.2
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 7.2e-216 754.2 579 65.8
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 1.0e-214 750.4 574 65.7
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.0e-214 750.4 579 64.6
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 4.0e-214 748.4 579 64.2
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.2e-213 746.9 579 64.2
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 9.8e-213 743.8 575 65.4
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.2e-212 742.7 605 63.3
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.1e-211 740.3 574 65.7
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.4e-211 739.2 579 63.6
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 8.6e-209 730.7 574 62.9
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 8.6e-209 730.7 579 63.2
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.5e-208 729.2 575 64.9
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 7.3e-208 727.6 577 64.6
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 3.6e-207 725.3 575 61.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.0e-206 723.8 596 62.2
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.0e-206 723.8 575 63.8
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 1.0e-206 723.8 577 62.9
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.4e-206 723.4 574 63.6
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.8e-206 723.0 572 63.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 4.0e-206 721.8 578 62.8
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.2e-205 720.3 574 63.1
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 5.8e-205 718.0 572 62.4
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.2e-204 716.1 575 61.4
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.9e-204 715.7 575 61.7
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 6.4e-204 714.5 575 62.3
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.9e-203 713.0 516 70.2
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 3.2e-203 712.2 575 62.4
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 3.5e-202 708.8 606 60.4
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 6.0e-202 708.0 575 62.1
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.0e-201 707.2 574 61.0
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 3.9e-201 705.3 576 62.2
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 3.9e-201 705.3 574 61.8
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 7.3e-200 701.0 575 61.4
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.6e-199 699.9 575 61.9
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 4.0e-198 695.3 574 60.8
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 2.6e-197 692.6 577 60.8
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.9e-195 686.4 577 60.5
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 6.6e-193 677.9 578 60.2
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 5.6e-192 674.9 577 59.1
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.3e-192 674.5 604 59.4
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 9.5e-192 674.1 647 55.2
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.2e-191 673.7 577 59.6
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 1.6e-191 673.3 577 61.0
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 2.8e-191 672.5 578 59.9
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 3.6e-191 672.2 576 59.7
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.3e-188 663.7 679 53.6
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 7.1e-187 657.9 576 58.7
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.1e-184 650.6 575 58.1
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.9e-180 636.0 496 65.9
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 6.4e-180 634.8 505 64.2
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.2e-178 630.6 574 56.6
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.2e-178 630.6 574 56.6
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 3.9e-177 625.5 529 60.9
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.5e-176 622.9 576 54.7
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.6e-175 620.2 448 69.6
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.6e-175 620.2 576 53.5
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 4.7e-175 618.6 574 55.6
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 3.1e-174 615.9 551 57.2
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 4.0e-174 615.5 574 55.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 4.0e-174 615.5 574 55.4
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 4.0e-174 615.5 519 59.7
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 6.9e-174 614.8 478 64.6
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.7e-172 610.1 572 53.1
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.2e-172 609.8 556 57.6
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-171 607.4 431 71.5
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.3e-167 594.0 547 55.6
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 2.5e-155 553.1 427 66.3
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.5e-152 543.9 385 68.6
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 4.3e-152 542.3 396 69.4
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.8e-142 510.4 555 48.3
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.5e-141 507.3 500 55.2
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.0e-140 504.6 476 58.4
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.8e-135 486.5 575 46.1
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 4.1e-126 456.1 355 62.8
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.0e-124 449.1 368 62.8
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 5.7e-120 435.6 462 50.2
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 7.0e-118 428.7 293 70.3
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.7e-116 424.1 607 38.7
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 8.3e-111 405.2 604 39.4
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 1.1e-107 394.8 566 41.2
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.0e-106 388.7 478 46.7
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 3.4e-64 250.4 248 54.0
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 2.4e-62 244.2 380 40.0
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.9e-60 236.9 275 48.0
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 9.6e-59 232.3 210 55.7
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 9.0e-57 225.7 529 31.8
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 5.8e-56 223.0 163 71.2
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.5e-35 155.2 167 50.9
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 2.4e-33 147.9 99 68.7
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-31 141.4 220 40.0
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 5.0e-31 140.2 622 23.5
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.4e-30 138.7 491 24.8
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 5.5e-30 136.7 153 47.7
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 3.5e-29 134.0 124 51.6
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 8.7e-28 129.4 74 77.0
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.2e-26 124.8 352 26.1
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 6.9e-25 119.8 131 49.6
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 5.9e-24 116.7 126 49.2
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 5.9e-24 116.7 126 49.2
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 6.1e-21 106.7 80 65.0
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.5e-19 102.1 73 68.5
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 7.4e-19 99.8 91 56.0
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.3e-18 99.0 80 62.5
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 3.2e-14 84.3 268 27.2
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-13 80.5 54 61.1
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 7.9e-13 79.7 52 67.3
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 9.1e-09 66.2 45 64.4
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 3.5e-08 64.3 61 55.7
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.9e-08 63.5 51 54.9
arahy.Tifrunner.gnm1.ann1.SHY03S Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-07 61.6 81 44.4
Lsat_1_v5_gn_9_63660 Lactuca sativa HOM05D000326 ORTHO05D000312 4.2e-06 57.4 53 49.1
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 4.2e-06 57.4 90 37.8


User provided reference genes

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