Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C12G4 Lonicera japonica HOM05D004614 ORTHO05D005339 6.9e-107 390.6 187 100.0
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 1.0e-65 253.8 195 70.8
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 2.3e-62 242.7 193 68.4
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 6.7e-62 241.1 200 64.0
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 1.1e-61 240.4 200 66.5
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.5e-61 240.0 195 65.1
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 2.6e-61 239.2 194 66.0
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 9.7e-61 237.3 198 65.7
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.2e-57 226.1 200 59.0
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 3.8e-57 225.3 194 62.4
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 5.0e-57 224.9 186 62.4
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 2.1e-55 219.5 202 59.4
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 3.6e-55 218.8 197 59.9
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 3.6e-55 218.8 187 63.6
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 3.6e-55 218.8 187 63.6
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 8.0e-55 217.6 208 59.6
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 1.0e-54 217.2 151 71.5
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 2.3e-54 216.1 208 59.1
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 3.0e-54 215.7 128 79.7
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 4.0e-54 215.3 207 60.4
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 1.2e-53 213.8 202 58.9
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 7.5e-53 211.1 214 57.5
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 9.8e-53 210.7 198 59.6
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 1.3e-52 210.3 193 63.2
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 1.3e-52 210.3 212 59.9
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 1.7e-52 209.9 152 69.7
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 1.7e-52 209.9 191 61.3
Haze_22759 Corylus avellana HOM05D004614 ORTHO05D005339 4.8e-52 208.4 169 64.5
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 4.8e-52 208.4 188 61.7
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 6.3e-52 208.0 178 60.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 6.3e-52 208.0 188 59.6
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 8.3e-52 207.6 126 76.2
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 8.3e-52 207.6 155 69.0
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 1.1e-51 207.2 164 65.2
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 1.4e-51 206.8 213 57.7
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 1.4e-51 206.8 213 57.7
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 1.4e-51 206.8 209 58.4
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.4e-51 206.8 126 76.2
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 1.4e-51 206.8 126 76.2
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 1.8e-51 206.5 203 58.1
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 3.1e-51 205.7 207 56.0
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 5.4e-51 204.9 198 57.6
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 5.4e-51 204.9 208 59.1
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 7.0e-51 204.5 210 58.1
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 7.0e-51 204.5 208 59.1
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 9.1e-51 204.1 148 70.9
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 1.6e-50 203.4 209 58.9
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 4.5e-50 201.8 212 53.8
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 1.0e-49 200.7 191 56.0
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 1.3e-49 200.3 126 71.4
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 5.0e-49 198.4 170 60.0
Solyc12g094580.3 Solanum lycopersicum HOM05D004614 ORTHO05D005339 6.5e-49 198.0 195 54.9
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 2.5e-48 196.1 197 54.3
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 4.2e-48 195.3 146 64.4
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 4.2e-48 195.3 204 58.3
CARHR292370 Cardamine hirsuta HOM05D004614 ORTHO05D005339 7.2e-48 194.5 148 64.2
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 7.2e-48 194.5 176 61.4
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 9.4e-48 194.1 202 54.0
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 1.2e-47 193.7 173 60.1
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 1.2e-47 193.7 198 57.1
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 1.6e-47 193.4 197 53.8
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 2.7e-47 192.6 191 55.5
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 3.6e-47 192.2 146 63.0
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 4.7e-47 191.8 150 64.0
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 8.0e-47 191.0 126 69.8
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 8.0e-47 191.0 126 69.8
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 1.0e-46 190.7 208 53.8
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 1.4e-46 190.3 146 63.7
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 1.4e-46 190.3 147 63.3
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 2.3e-46 189.5 123 71.5
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 3.0e-46 189.1 197 55.3
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 3.0e-46 189.1 197 53.8
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 4.0e-46 188.7 193 58.5
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 5.2e-46 188.3 147 63.3
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 5.2e-46 188.3 147 63.3
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 5.2e-46 188.3 147 63.3
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 5.2e-46 188.3 134 67.9
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 6.8e-46 188.0 151 66.2
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 1.5e-45 186.8 146 61.6
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 1.5e-45 186.8 133 69.9
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 1.5e-45 186.8 102 82.4
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 2.0e-45 186.4 193 57.0
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 3.4e-45 185.7 127 70.1
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 4.4e-45 185.3 155 67.1
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 9.8e-45 184.1 128 68.0
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 9.8e-45 184.1 191 54.5
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 6.3e-44 181.4 195 55.9
Zm00001eb002680 Zea mays HOM05D004614 ORTHO05D005339 6.3e-44 181.4 197 51.8
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 8.3e-44 181.0 109 74.3
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 8.3e-44 181.0 113 79.6
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 1.1e-43 180.6 198 52.5
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.1e-43 180.6 95 84.2
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 1.4e-43 180.3 127 72.4
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 1.4e-43 180.3 144 62.5
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 1.4e-43 180.3 204 51.0
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 7.0e-43 177.9 94 85.1
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 7.0e-43 177.9 128 65.6
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 1.2e-42 177.2 111 74.8
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 2.0e-42 176.4 199 53.8
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 2.7e-42 176.0 91 85.7
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.7e-42 176.0 94 83.0
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 5.9e-42 174.9 167 56.3
EL10Ac1g01977 Beta vulgaris HOM05D004614 ORTHO05D005339 1.0e-41 174.1 144 63.9
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.0e-41 174.1 199 52.3
Zm00001eb402600 Zea mays HOM05D004614 ORTHO05D005339 1.0e-41 174.1 199 50.3
Hund05117 Selenicereus undatus HOM05D004614 ORTHO05D005339 1.3e-41 173.7 155 60.6
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 5.0e-41 171.8 144 61.8
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.9e-40 169.9 199 50.8
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 5.6e-40 168.3 186 52.7
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 1.2e-39 167.2 199 49.7
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 1.2e-39 167.2 112 75.0
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.6e-39 166.8 199 50.3
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 2.1e-39 166.4 94 78.7
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.8e-39 166.0 193 49.2
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 6.1e-39 164.9 134 63.4
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 6.1e-39 164.9 91 82.4
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 6.1e-39 164.9 197 49.7
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 1.0e-38 164.1 103 71.8
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 1.4e-38 163.7 188 52.7
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 5.2e-38 161.8 154 56.5
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 3.7e-36 155.6 121 62.8
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 1.6e-34 150.2 149 57.7
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 5.9e-34 148.3 155 56.8
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 3.6e-31 139.0 200 46.5
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 1.0e-30 137.5 100 65.0
CDE05G2290 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 1.8e-30 136.7 80 78.8
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.7e-28 130.2 148 48.6
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 2.2e-28 129.8 65 87.7
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 3.7e-28 129.0 65 89.2
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 6.4e-28 128.3 147 48.3
SMO202G0022 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 6.0e-26 121.7 75 74.7
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 1.0e-25 120.9 83 69.9
Nitab4.5_0006949g0060 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.1e-11 74.3 73 52.1


User provided reference genes

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