Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 2.5e-256 888.3 449 100.0
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 4.1e-198 694.9 462 78.8
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.6e-197 693.0 468 76.7
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 2.9e-196 688.7 464 77.4
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 2.9e-196 688.7 460 77.8
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 3.8e-196 688.3 464 77.4
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.2e-195 685.3 464 77.4
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.2e-195 684.9 464 77.2
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 5.5e-195 684.5 463 77.1
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 7.2e-195 684.1 468 76.1
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 4.7e-194 681.4 468 76.3
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 3.0e-193 678.7 461 75.7
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 3.0e-193 678.7 462 76.4
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 4.0e-193 678.3 464 76.3
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 8.8e-193 677.2 461 75.9
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.2e-192 676.8 464 76.1
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.5e-192 676.4 480 74.4
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 2.0e-192 676.0 462 76.4
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 2.0e-192 676.0 465 75.7
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 4.4e-192 674.9 459 76.0
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 5.7e-192 674.5 477 73.2
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 5.7e-192 674.5 468 74.6
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 9.8e-192 673.7 465 77.0
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 2.8e-191 672.2 462 75.3
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.8e-191 672.2 480 73.8
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.8e-190 669.5 464 74.8
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 4.1e-190 668.3 462 75.5
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 1.2e-189 666.8 460 75.7
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 1.6e-189 666.4 462 75.1
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 2.7e-189 665.6 462 75.3
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 1.0e-188 663.7 460 74.3
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 1.0e-188 663.7 461 75.5
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 1.3e-188 663.3 466 75.1
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 2.9e-188 662.1 466 73.6
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 2.9e-188 662.1 461 74.2
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 5.0e-188 661.4 468 73.9
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 6.6e-188 661.0 468 73.9
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 6.6e-188 661.0 465 74.4
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 8.6e-188 660.6 462 75.1
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.1e-187 660.2 463 75.2
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.9e-187 659.4 462 75.5
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 4.2e-187 658.3 460 73.9
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 9.5e-187 657.1 463 74.7
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 1.2e-186 656.8 464 73.1
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 1.2e-186 656.8 461 73.8
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.1e-186 656.0 466 73.2
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 4.7e-186 654.8 460 74.6
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 6.1e-186 654.4 460 74.1
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 8.0e-186 654.1 460 73.3
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.0e-185 653.7 460 73.5
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.8e-185 652.9 482 72.2
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.8e-185 652.9 458 74.0
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 5.2e-185 651.4 460 73.9
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 2.6e-184 649.0 462 73.4
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 3.4e-184 648.7 460 72.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 5.7e-184 647.9 464 72.8
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 6.3e-183 644.4 442 75.3
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.1e-182 643.7 433 76.0
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 2.4e-182 642.5 460 72.4
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 5.4e-182 641.3 433 75.5
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 2.0e-181 639.4 469 72.5
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 2.3e-180 636.0 469 72.3
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 6.6e-180 634.4 460 71.3
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.5e-179 633.3 457 72.9
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 2.5e-179 632.5 526 66.5
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 2.5e-179 632.5 465 71.6
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 2.1e-178 629.4 460 71.5
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 4.7e-178 628.2 466 70.6
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.0e-177 627.1 465 71.0
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 2.3e-177 625.9 465 71.2
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 4.0e-177 625.2 455 71.9
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 6.8e-177 624.4 465 70.3
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 1.5e-176 623.2 420 75.7
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 3.4e-176 622.1 465 70.5
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 7.5e-176 620.9 457 70.9
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 1.3e-175 620.2 459 71.7
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.2e-175 619.4 458 71.2
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 3.7e-175 618.6 458 71.0
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 5.4e-174 614.8 461 71.4
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 2.0e-173 612.8 461 71.1
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 2.3e-172 609.4 465 70.3
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 8.6e-172 607.4 461 68.1
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 4.7e-170 601.7 369 82.1
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 6.2e-170 601.3 410 74.4
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.9e-167 592.4 364 81.9
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.1e-166 590.5 464 69.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 2.4e-166 589.3 460 69.8
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.6e-165 586.6 450 69.1
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.4e-158 562.8 377 75.3
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.8e-153 546.6 454 65.6
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 3.1e-153 545.8 421 66.3
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 4.0e-153 545.4 339 80.8
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 3.5e-149 532.3 339 78.8
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 2.5e-147 526.2 330 80.6
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.1e-142 510.8 415 62.9
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 6.0e-141 505.0 354 74.3
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.7e-140 503.4 389 71.0
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 3.0e-140 502.7 356 73.0
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 3.9e-140 502.3 438 61.4
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.1e-139 500.7 461 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 6.4e-135 485.0 394 61.4
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 6.7e-132 474.9 310 78.1
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.6e-128 461.5 235 92.8
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.6e-128 461.5 235 92.8
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.2e-127 459.9 311 74.9
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.3e-126 454.5 414 59.4
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 8.2e-122 441.4 310 72.3
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 3.4e-120 436.0 286 77.3
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 1.9e-115 420.2 417 54.7
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 9.0e-113 411.4 336 64.9
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 6.5e-111 405.2 421 56.3
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 8.5e-95 351.7 419 45.8
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 8.3e-74 282.0 243 64.6
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 6.3e-66 255.8 318 43.7
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 1.2e-56 224.9 341 39.9
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.4e-52 211.5 399 35.6
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.5e-43 181.4 117 76.9
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 1.5e-43 181.4 99 86.9
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 2.0e-43 181.0 396 34.6
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 2.6e-43 180.6 101 86.1
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 2.6e-43 180.6 148 64.9
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.3e-42 178.3 344 33.1
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 1.1e-41 175.3 349 33.8
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 6.0e-40 169.5 359 32.3
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 7.8e-40 169.1 152 63.8
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 4.8e-21 106.7 51 88.2
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 5.4e-17 93.2 96 57.3
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 2.3e-15 87.8 104 51.9
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 1.6e-08 65.1 160 27.5


User provided reference genes

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