Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C115T4 Lonicera japonica HOM05D003516 ORTHO05D004068 4.6e-132 474.6 236 100.0
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 2.7e-100 369.0 214 81.3
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 4.6e-100 368.2 214 82.7
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 6.0e-100 367.9 214 81.3
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 3.0e-99 365.5 215 80.5
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 5.1e-99 364.8 219 79.5
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.1e-98 363.6 220 78.2
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 4.3e-98 361.7 217 78.8
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 1.3e-97 360.1 215 80.0
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 4.8e-97 358.2 219 78.1
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 8.1e-97 357.5 214 80.8
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 1.4e-96 356.7 218 78.9
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 1.8e-96 356.3 212 80.7
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 4.0e-96 355.1 220 77.3
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 5.3e-96 354.8 214 78.5
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 9.0e-96 354.0 214 78.0
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 9.0e-96 354.0 219 79.5
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.2e-95 353.6 219 76.7
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 1.2e-95 353.6 217 77.0
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 1.2e-95 353.6 219 78.1
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.2e-95 353.6 214 77.1
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 1.5e-95 353.2 219 77.2
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 1.5e-95 353.2 214 77.1
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 1.5e-95 353.2 219 77.2
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.5e-95 353.2 214 79.9
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 2.0e-95 352.8 219 78.5
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 2.6e-95 352.4 216 78.2
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 3.4e-95 352.1 214 78.0
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 5.8e-95 351.3 220 78.2
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 7.6e-95 350.9 220 77.7
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 7.6e-95 350.9 221 76.0
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.7e-94 349.7 219 77.2
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 3.8e-94 348.6 220 77.3
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 3.8e-94 348.6 218 78.0
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 6.5e-94 347.8 221 76.9
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 8.4e-94 347.4 219 76.3
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 1.1e-93 347.1 221 74.2
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 1.1e-93 347.1 222 76.1
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 1.4e-93 346.7 213 78.9
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 1.4e-93 346.7 215 78.6
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.9e-93 346.3 216 75.9
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 2.5e-93 345.9 220 74.1
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 2.5e-93 345.9 216 76.9
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 3.2e-93 345.5 220 75.9
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 3.2e-93 345.5 222 77.0
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 3.2e-93 345.5 222 76.6
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 4.2e-93 345.1 214 75.7
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 5.5e-93 344.7 214 77.6
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 1.2e-92 343.6 220 75.5
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 2.1e-92 342.8 216 74.5
Solyc02g088510.4 Solanum lycopersicum HOM05D003516 ORTHO05D004068 2.7e-92 342.4 221 74.2
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 3.5e-92 342.0 221 75.6
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 4.6e-92 341.7 220 75.0
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 4.6e-92 341.7 220 75.0
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 1.3e-91 340.1 216 75.9
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 1.3e-91 340.1 215 75.8
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 1.3e-91 340.1 215 75.8
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 1.3e-91 340.1 218 72.9
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 1.8e-91 339.7 217 75.1
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 2.3e-91 339.3 214 76.6
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 3.0e-91 339.0 220 75.0
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 1.5e-90 336.7 222 74.3
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 1.5e-90 336.7 215 75.3
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.5e-90 336.7 216 74.5
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 2.5e-90 335.9 217 74.2
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 2.5e-90 335.9 210 75.7
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 2.5e-90 335.9 219 72.1
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 5.7e-90 334.7 214 73.8
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 7.4e-90 334.3 216 74.1
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.3e-89 333.6 219 74.0
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 1.3e-89 333.6 209 77.0
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 4.8e-89 331.6 209 76.1
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 6.2e-89 331.3 220 74.5
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 1.1e-88 330.5 222 71.6
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 1.4e-88 330.1 214 72.4
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 1.4e-88 330.1 219 72.1
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 1.8e-88 329.7 214 72.0
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 1.8e-88 329.7 215 72.6
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 2.4e-88 329.3 217 75.6
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 3.1e-88 328.9 222 73.0
Psat1g105360 Pisum sativum HOM05D003516 ORTHO05D004068 3.1e-88 328.9 220 74.5
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 4.1e-88 328.6 217 75.6
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 6.9e-88 327.8 211 75.4
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 6.9e-88 327.8 222 68.5
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 1.5e-87 326.6 215 69.8
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 3.4e-87 325.5 214 71.0
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 4.5e-87 325.1 222 71.6
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 5.8e-87 324.7 214 71.0
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 7.6e-87 324.3 223 69.1
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 1.3e-86 323.6 219 72.6
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 1.3e-86 323.6 229 69.0
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 2.9e-86 322.4 215 69.8
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 5.5e-85 318.2 201 77.1
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 7.1e-85 317.8 215 72.1
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 9.3e-85 317.4 214 69.6
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 1.6e-84 316.6 216 68.5
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 1.6e-84 316.6 220 70.9
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 2.1e-84 316.2 215 68.8
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 2.1e-84 316.2 219 71.2
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 2.1e-84 316.2 214 72.4
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 2.7e-84 315.8 211 73.9
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 4.6e-84 315.1 195 74.9
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 7.9e-84 314.3 215 68.4
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 1.0e-83 313.9 223 68.2
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 4.3e-82 308.5 212 68.9
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 4.3e-82 308.5 219 67.1
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 9.7e-82 307.4 222 69.4
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 9.7e-82 307.4 225 65.8
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 6.3e-81 304.7 198 73.7
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 7.7e-79 297.7 216 67.1
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 1.3e-78 297.0 213 68.1
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 1.3e-78 297.0 214 67.8
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 2.2e-78 296.2 214 63.1
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 6.5e-78 294.7 202 72.3
Psat1g105320 Pisum sativum HOM05D003516 ORTHO05D004068 1.1e-77 293.9 188 75.5
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 4.6e-76 288.5 218 63.3
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 4.6e-76 288.5 214 66.4
HanXRQChr17g0546741 Helianthus annuus HOM05D003516 ORTHO05D004068 4.6e-76 288.5 261 58.2
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 4.6e-76 288.5 201 73.6
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 6.1e-76 288.1 215 69.8
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 1.4e-75 287.0 222 63.5
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 1.1e-74 283.9 226 62.4
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 2.0e-74 283.1 231 59.7
Nn4g23325 Nelumbo nucifera HOM05D003516 ORTHO05D004068 7.4e-74 281.2 168 78.0
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 3.7e-73 278.9 223 61.0
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 3.7e-73 278.9 223 61.0
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 1.8e-72 276.6 216 60.6
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 3.1e-72 275.8 198 70.7
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 5.3e-72 275.0 214 64.0
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 1.5e-71 273.5 230 61.3
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 4.5e-71 271.9 216 62.0
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 5.9e-71 271.6 219 63.0
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 2.5e-69 266.2 220 61.8
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 1.2e-68 263.8 223 59.6
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.0e-67 260.8 211 60.2
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 1.4e-67 260.4 222 59.0
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 5.3e-64 248.4 211 57.8
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.5e-61 240.4 207 57.0
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 2.5e-61 239.6 217 54.8
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 3.2e-61 239.2 217 55.3
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 2.1e-60 236.5 214 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 5.2e-59 231.9 215 51.6
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 3.7e-57 225.7 216 54.2
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 5.3e-56 221.9 211 53.6
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 4.5e-55 218.8 175 62.9
Nitab4.5_0000053g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 9.4e-53 211.1 135 75.6
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 3.6e-52 209.1 221 47.1
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 6.1e-52 208.4 226 49.1
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 4.8e-49 198.7 128 72.7
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 4.0e-43 179.1 109 76.1
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 4.4e-42 175.6 203 47.8
CsaV3_3G041010 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.6e-39 167.2 130 63.1
Lalb_Chr17g0337111 Lupinus albus HOM05D003516 ORTHO05D004068 2.3e-38 163.3 108 71.3
Cc07_g03810 Coffea canephora HOM05D003516 ORTHO05D004068 4.3e-37 159.1 97 78.4
COL.COLO4_12254 Corchorus olitorius HOM05D003516 ORTHO05D004068 1.2e-36 157.5 96 77.1
COL.COLO4_12253 Corchorus olitorius HOM05D003516 ORTHO05D004068 4.7e-36 155.6 109 66.1
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 2.6e-34 149.8 231 39.4
Cpa.g.sc14.137 Carica papaya HOM05D003516 ORTHO05D004068 9.8e-34 147.9 97 75.3
PGSC0003DMG400001348 Solanum tuberosum HOM05D003516 ORTHO05D004068 9.8e-34 147.9 97 72.2
Psat3g198560 Pisum sativum HOM05D003516 ORTHO05D004068 6.4e-33 145.2 92 77.2
SalBow1G7636 Salvia bowleyana HOM05D003516 ORTHO05D004068 7.0e-32 141.7 94 74.5
Lsat_1_v5_gn_4_89441 Lactuca sativa HOM05D003516 ORTHO05D004068 1.1e-29 134.4 102 60.8
SEGI_03289 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.5e-29 134.0 115 50.4
HPP92_023641 Vanilla planifolia HOM05D003516 ORTHO05D004068 1.0e-27 127.9 97 62.9
Lsat_1_v5_gn_3_33981 Lactuca sativa HOM05D003516 ORTHO05D004068 3.4e-26 122.9 72 72.2
RcHm_v2.0_Chr4g0415091 Rosa chinensis HOM05D003516 ORTHO05D004068 4.4e-26 122.5 95 66.3
Cre06.g277100 Chlamydomonas reinhardtii HOM05D003516 ORTHO05D004068 3.9e-22 109.4 218 32.6
Lsat_1_v5_gn_7_15281 Lactuca sativa HOM05D003516 ORTHO05D004068 2.5e-21 106.7 63 81.0
Lsat_1_v5_gn_4_58340 Lactuca sativa HOM05D003516 ORTHO05D004068 5.6e-21 105.5 96 56.2
Lsat_1_v5_gn_3_88480 Lactuca sativa HOM05D003516 ORTHO05D004068 5.2e-19 99.0 80 61.2
Cfa022187 Carpinus fangiana HOM05D003516 ORTHO05D004068 2.9e-17 93.2 146 34.2
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 3.7e-17 92.8 167 30.5
MCO12G151 Micromonas commoda HOM05D003516 ORTHO05D004068 8.3e-17 91.7 168 34.5
Psat3g198720 Pisum sativum HOM05D003516 ORTHO05D004068 3.0e-14 83.2 53 73.6
MCO09G694 Micromonas commoda HOM05D003516 ORTHO05D004068 5.6e-13 79.0 160 31.2
AUR62043822 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.2e-12 75.5 58 63.8
MCO13G548 Micromonas commoda HOM05D003516 ORTHO05D004068 6.8e-11 72.0 125 32.0
Cre16.g678325 Chlamydomonas reinhardtii HOM05D003516 ORTHO05D004068 1.7e-09 67.4 104 35.6
CBR_g38908 Chara braunii HOM05D021006 ORTHO05D024937 7.8e-07 58.5 142 26.1
CBR_g38907 Chara braunii HOM05D021006 ORTHO05D024937 2.3e-06 57.0 142 26.1
GSVIVG01011482001 Vitis vinifera HOM05D003516 ORTHO05D004068 8.6e-06 55.1 31 83.9


User provided reference genes

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