Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.3e-66 256.5 152 100.0
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 6.8e-28 127.9 121 63.6
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 1.6e-21 106.7 140 54.3
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 1.4e-20 103.6 120 60.0
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 8.8e-20 100.9 136 49.3
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.0e-19 99.8 136 48.5
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.7e-16 89.4 116 51.7
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 2.7e-16 89.4 129 45.7
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 7.8e-16 87.8 114 50.0
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.7e-15 86.7 111 55.9
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 2.3e-15 86.3 138 46.4
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 3.8e-15 85.5 114 53.5
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 8.6e-15 84.3 133 47.4
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 8.6e-15 84.3 111 57.7
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 1.1e-14 84.0 132 53.0
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.5e-14 83.6 111 46.8
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 2.5e-14 82.8 136 47.1
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 5.6e-14 81.6 125 48.0
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.6e-13 80.1 130 45.4
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.6e-13 80.1 139 42.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.6e-13 80.1 114 52.6
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 3.6e-13 79.0 129 46.5
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 4.7e-13 78.6 129 46.5
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 8.0e-13 77.8 98 55.1
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 1.0e-12 77.4 125 46.4
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.4e-12 77.0 121 48.8
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.8e-12 76.6 142 47.9
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 1.8e-12 76.6 128 44.5
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.3e-12 76.3 111 46.8
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 2.3e-12 76.3 112 50.0
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.0e-12 75.9 135 41.5
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 4.0e-12 75.5 121 43.0
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 5.2e-12 75.1 125 43.2
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 8.9e-12 74.3 111 49.5
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 8.9e-12 74.3 139 40.3
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.2e-11 73.9 126 46.8
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 1.5e-11 73.6 116 49.1
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.0e-11 73.2 126 46.0
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.6e-11 72.8 126 46.8
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 2.6e-11 72.8 120 44.2
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 2.6e-11 72.8 145 40.0
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.4e-11 72.0 125 38.4
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 4.4e-11 72.0 100 40.0
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 4.4e-11 72.0 126 46.8
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 1.3e-10 70.5 99 39.4
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.7e-10 70.1 127 43.3
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 2.2e-10 69.7 119 41.2
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 2.9e-10 69.3 111 48.6
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 3.7e-10 68.9 111 49.5
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 3.7e-10 68.9 100 52.0
Aqoxy476s001 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.9e-10 68.6 127 46.5
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.9e-10 68.6 104 34.6
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.9e-10 68.6 104 34.6
Aqoxy6G00704 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.9e-10 68.6 127 46.5
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 4.9e-10 68.6 124 42.7
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 4.9e-10 68.6 125 42.4
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 8.3e-10 67.8 134 42.5
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.1e-09 67.4 120 35.8
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.4e-09 67.0 118 40.7
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 1.8e-09 66.6 138 39.9
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.8e-09 66.6 138 39.9
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 1.8e-09 66.6 124 33.1
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 2.4e-09 66.2 110 32.7
Lsat_1_v5_gn_1_2980 Lactuca sativa HOM05D004728 ORTHO05D002375 3.2e-09 65.9 131 39.7
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 4.1e-09 65.5 96 34.4
Oeu024506.2 Olea europaea HOM05D012586 ORTHO05D012196 4.1e-09 65.5 125 48.0
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 5.4e-09 65.1 104 43.3
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 5.4e-09 65.1 122 31.1
Sopen05g029860 Solanum pennellii HOM05D000436 ORTHO05D001944 5.4e-09 65.1 104 50.0
Nitab4.5_0003374g0020 Nicotiana tabacum HOM05D012586 ORTHO05D012196 7.0e-09 64.7 117 47.9
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 9.2e-09 64.3 116 42.2
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 9.2e-09 64.3 111 30.6
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 1.2e-08 63.9 136 39.7
Nitab4.5_0007336g0010 Nicotiana tabacum HOM05D012586 ORTHO05D012196 1.2e-08 63.9 125 47.2
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 1.6e-08 63.5 118 33.1
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.6e-08 63.5 120 40.8
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 2.7e-08 62.8 124 40.3
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 3.5e-08 62.4 107 45.8
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 5.9e-08 61.6 130 39.2
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 7.8e-08 61.2 117 43.6
Dinv13237 Davidia involucrata HOM05D004728 ORTHO05D002375 7.8e-08 61.2 150 39.3
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 7.8e-08 61.2 122 38.5
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 7.8e-08 61.2 138 27.5
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.0e-07 60.8 141 39.0
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.0e-07 60.8 115 38.3
ECA232G3092 Erigeron canadensis HOM05D004728 ORTHO05D045252 1.7e-07 60.1 140 35.0
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.7e-07 60.1 114 37.7
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.7e-07 60.1 124 24.2
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 1.7e-07 60.1 145 43.4
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 2.3e-07 59.7 142 27.5
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 2.3e-07 59.7 117 28.2
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 3.0e-07 59.3 123 34.1
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 3.0e-07 59.3 119 41.2
MSTRG.3754 Avicennia marina HOM05D004728 ORTHO05D002375 3.9e-07 58.9 116 44.0
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 3.9e-07 58.9 125 44.0
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.9e-07 58.9 128 39.8
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.9e-07 58.9 128 39.8
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 3.9e-07 58.9 124 36.3
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 3.9e-07 58.9 117 41.0
Solyc04g074770.2 Solanum lycopersicum HOM05D012586 ORTHO05D012196 3.9e-07 58.9 135 42.2
Solyc05g051450.2 Solanum lycopersicum HOM05D019315 ORTHO05D002375 3.9e-07 58.9 97 51.5
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 3.9e-07 58.9 135 40.7
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 3.9e-07 58.9 123 41.5
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 5.0e-07 58.5 80 56.2
Peaxi162Scf00044g01721 Petunia axillaris HOM05D019315 ORTHO05D002375 5.0e-07 58.5 105 48.6
PGSC0003DMG400030842 Solanum tuberosum HOM05D012586 ORTHO05D012196 5.0e-07 58.5 135 42.2
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 8.6e-07 57.8 151 38.4
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 8.6e-07 57.8 93 49.5
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 8.6e-07 57.8 119 39.5
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 8.6e-07 57.8 111 38.7
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.1e-06 57.4 118 44.1
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 1.5e-06 57.0 117 41.0
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 1.5e-06 57.0 119 39.5
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.5e-06 57.0 122 32.8
Oeu041264.1 Olea europaea HOM05D012586 ORTHO05D012196 1.5e-06 57.0 106 49.1
TAR376G0192 Trochodendron aralioides HOM05D004728 ORTHO05D002375 1.5e-06 57.0 61 44.3
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 1.9e-06 56.6 129 41.1
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 1.9e-06 56.6 110 39.1
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 1.9e-06 56.6 116 39.7
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 1.9e-06 56.6 117 42.7
DCAR_020003 Daucus carota HOM05D004728 ORTHO05D002375 2.5e-06 56.2 86 55.8
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 2.5e-06 56.2 115 27.8
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 2.5e-06 56.2 114 39.5
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.5e-06 56.2 116 39.7
Oeu002157.4 Olea europaea HOM05D004728 ORTHO05D002375 2.5e-06 56.2 134 41.0
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 3.3e-06 55.8 119 40.3
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.3e-06 55.5 90 52.2
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 4.3e-06 55.5 118 36.4
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 4.3e-06 55.5 117 41.0
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 5.6e-06 55.1 115 27.8
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 5.6e-06 55.1 126 38.1
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 5.6e-06 55.1 90 52.2
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 5.6e-06 55.1 109 42.2
FAN26G2532 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.3e-06 54.7 107 42.1
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 7.3e-06 54.7 123 37.4
Potri.002G101500 Populus trichocarpa HOM05D004728 ORTHO05D002375 7.3e-06 54.7 153 35.3
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 7.3e-06 54.7 120 26.7
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 7.3e-06 54.7 119 30.3
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 9.5e-06 54.3 126 41.3
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 9.5e-06 54.3 107 42.1


User provided reference genes

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