Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.6e-109 399.4 204 100.0
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.1e-64 249.6 202 70.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 3.1e-60 235.7 200 65.0
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.5e-59 233.4 214 64.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 6.4e-58 228.0 199 66.3
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 6.4e-58 228.0 199 66.3
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.9e-57 226.5 200 66.5
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-57 226.1 204 62.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.2e-57 225.7 204 62.7
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 4.2e-57 225.3 206 65.0
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 5.5e-57 224.9 202 65.8
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 5.5e-57 224.9 203 65.0
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.5e-56 222.2 202 64.9
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 4.6e-56 221.9 199 64.3
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.6e-56 221.9 203 62.6
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 7.9e-56 221.1 208 62.5
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-55 220.7 203 64.5
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.0e-55 220.7 203 64.5
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.3e-55 220.3 203 66.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.3e-55 220.3 204 63.7
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 3.0e-55 219.2 203 63.1
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.0e-55 219.2 195 65.1
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 3.9e-55 218.8 212 63.7
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.7e-55 217.6 204 61.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.1e-54 217.2 202 64.4
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-54 217.2 198 64.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.9e-54 216.5 204 62.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.9e-54 216.5 205 62.9
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.5e-54 216.1 202 60.9
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 3.3e-54 215.7 203 61.1
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 4.3e-54 215.3 203 63.1
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.6e-54 214.9 202 59.9
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 7.4e-54 214.5 203 61.1
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 9.6e-54 214.2 203 63.1
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.8e-53 211.8 201 62.7
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.8e-53 211.8 208 61.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.8e-53 211.8 201 60.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 6.2e-53 211.5 199 62.3
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 6.9e-52 208.0 139 77.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 9.0e-52 207.6 207 57.5
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 9.0e-52 207.6 199 60.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 9.0e-52 207.6 233 54.1
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 9.0e-52 207.6 199 60.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 5.8e-51 204.9 199 59.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 7.6e-51 204.5 202 55.4
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.6e-51 204.5 207 57.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.3e-50 203.8 205 59.5
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.7e-50 203.4 202 61.4
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.2e-50 203.0 163 66.9
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.9e-50 202.6 205 60.0
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 3.8e-50 202.2 198 59.1
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.8e-50 202.2 202 57.4
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 6.5e-50 201.4 198 60.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.5e-50 201.4 202 57.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 8.4e-50 201.1 207 58.9
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.1e-49 200.7 198 60.1
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-49 200.3 205 60.5
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.4e-49 200.3 205 57.6
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-49 199.5 204 58.8
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-49 199.5 204 58.8
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 4.2e-49 198.7 205 57.6
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 4.2e-49 198.7 205 59.5
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.2e-49 198.7 204 58.8
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 5.5e-49 198.4 208 55.8
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.5e-49 198.4 205 59.0
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 7.1e-49 198.0 203 59.6
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 7.1e-49 198.0 162 68.5
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 7.1e-49 198.0 198 59.6
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-48 197.2 198 59.6
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-48 197.2 198 59.6
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.2e-48 197.2 198 59.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-48 197.2 199 57.8
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.6e-48 196.8 204 57.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 2.7e-48 196.1 198 59.6
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.7e-48 196.1 198 61.1
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.7e-48 196.1 198 61.1
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.7e-48 196.1 198 59.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 6.0e-48 194.9 193 60.1
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.0e-48 194.9 205 58.5
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 7.9e-48 194.5 200 57.5
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 7.9e-48 194.5 199 56.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.8e-47 193.4 201 56.2
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-47 193.0 201 58.7
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-47 193.0 201 58.7
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 8.7e-47 191.0 198 58.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-46 190.7 155 67.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 4.3e-46 188.7 155 67.1
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 4.3e-46 188.7 203 56.2
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 4.3e-46 188.7 204 56.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.3e-45 187.2 142 66.9
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-45 186.8 199 56.3
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.1e-45 186.4 194 56.7
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.1e-45 186.4 199 55.8
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.8e-45 186.0 198 57.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.8e-45 185.3 199 55.8
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 6.3e-45 184.9 198 55.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 6.3e-45 184.9 144 69.4
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 6.9e-44 181.4 202 55.4
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 6.9e-44 181.4 194 55.7
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 6.9e-44 181.4 194 55.7
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 9.0e-44 181.0 183 61.7
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 9.0e-44 181.0 216 50.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 1.5e-43 180.3 157 61.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 7.6e-43 177.9 209 55.0
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.0e-42 177.6 200 54.0
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-42 177.6 127 70.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.2e-42 176.4 152 60.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 5.0e-42 175.3 206 51.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 4.2e-41 172.2 155 62.6
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.7e-40 169.5 196 53.1
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 6.1e-40 168.3 203 50.7
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-39 166.8 156 59.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.5e-38 163.7 147 59.2
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.3e-37 160.6 169 58.0
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.7e-37 159.1 201 52.7
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 4.8e-37 158.7 184 53.8
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 4.1e-36 155.6 201 50.2
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.0e-35 153.3 140 57.1
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.2e-33 146.0 98 76.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 9.4e-33 144.4 207 44.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 4.6e-32 142.1 208 41.8
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.9e-31 139.0 145 58.6
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 5.1e-31 138.7 128 59.4
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.9e-27 125.2 119 55.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-26 123.2 109 57.8
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 2.9e-26 122.9 142 54.2
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.4e-25 120.6 109 57.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 3.2e-25 119.4 108 58.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 7.2e-25 118.2 108 57.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.6e-24 117.1 132 49.2
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.1e-24 116.7 92 67.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 4.7e-24 115.5 116 51.7
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.3e-22 109.4 109 56.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 9.7e-22 107.8 110 54.5
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.2e-21 106.7 122 50.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.7e-21 105.9 100 63.0
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 4.5e-19 99.0 101 49.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.7e-19 98.2 110 48.2
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 6.5e-18 95.1 203 38.9
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.5e-18 95.1 105 49.5
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 8.5e-18 94.7 110 49.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 9.4e-17 91.3 113 46.0
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 6.1e-16 88.6 87 54.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.5e-14 84.0 78 55.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.3e-13 80.9 105 41.0
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.8e-13 79.7 145 35.2
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.7e-13 79.3 71 63.4
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 4.8e-13 79.0 101 44.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-12 77.0 74 59.5
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 4.1e-12 75.9 133 33.8
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.2e-11 74.3 99 48.5
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.6e-11 73.9 88 47.7


User provided reference genes

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