Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A88T36 Lonicera japonica HOM05D003319 ORTHO05D003739 8.2e-117 423.7 209 100.0
Dinv44863 Davidia involucrata HOM05D001049 ORTHO05D001986 9.9e-46 187.6 159 64.8
Lj4A737G58 Lonicera japonica HOM05D003319 ORTHO05D003739 1.4e-44 183.7 155 65.8
Dinv42609 Davidia involucrata HOM05D003319 ORTHO05D003739 1.9e-44 183.3 158 65.8
TAR376G1177 Trochodendron aralioides HOM05D003319 ORTHO05D003739 1.2e-43 180.6 158 62.7
Rhsim07G0212100 Rhododendron simsii HOM05D003319 ORTHO05D003739 7.8e-43 177.9 158 62.0
GSVIVG01009184001 Vitis vinifera HOM05D003319 ORTHO05D003739 3.3e-41 172.6 155 61.3
Hma1.2p1_0010F.1_g006630 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 1.6e-40 170.2 158 58.9
MBI16_g19592_MAGBIO Magnolia biondii HOM05D003319 ORTHO05D003739 1.6e-40 170.2 158 58.2
CSS0018207 Camellia sinensis var. sinensis HOM05D003319 ORTHO05D003739 2.1e-40 169.9 157 61.8
QL01p017023 Quercus lobata HOM05D003319 ORTHO05D003739 4.8e-40 168.7 165 55.8
Ciclev10000622m.g Citrus clementina HOM05D003319 ORTHO05D003739 6.2e-40 168.3 157 60.5
Atru.chr13.1006 Acer truncatum HOM05D003319 ORTHO05D003739 1.1e-39 167.5 158 60.1
Cpa.g.sc21.26 Carica papaya HOM05D003319 ORTHO05D003739 1.8e-39 166.8 160 58.8
vmacro04648 Vaccinium macrocarpon HOM05D003319 ORTHO05D003739 1.8e-39 166.8 157 59.2
Nitab4.5_0001607g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 3.1e-39 166.0 158 57.0
Cfa009865 Carpinus fangiana HOM05D003319 ORTHO05D003739 4.0e-39 165.6 158 58.2
TAR628G1108 Trochodendron aralioides HOM05D003319 ORTHO05D003739 6.9e-39 164.9 158 60.1
CiPaw.07G165000 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.5e-38 163.7 158 56.3
Haze_23237 Corylus avellana HOM05D003319 ORTHO05D003739 1.5e-38 163.7 158 58.2
Nn1g05581 Nelumbo nucifera HOM05D003319 ORTHO05D003739 2.6e-38 162.9 158 61.4
Manes.02G144600 Manihot esculenta HOM05D003319 ORTHO05D003739 4.4e-38 162.2 158 60.1
Eucgr.F02154 Eucalyptus grandis HOM05D003319 ORTHO05D003739 5.8e-38 161.8 158 58.9
Thecc.08G071400 Theobroma cacao HOM05D003319 ORTHO05D003739 9.9e-38 161.0 168 55.4
CAN.G806.11 Capsicum annuum HOM05D003319 ORTHO05D003739 1.3e-37 160.6 157 56.7
CiPaw.08G055800 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.3e-37 160.6 158 57.6
DCAR_012853 Daucus carota HOM05D003319 ORTHO05D003739 1.3e-37 160.6 162 54.9
Manes.18G058300 Manihot esculenta HOM05D003319 ORTHO05D003739 1.3e-37 160.6 158 58.9
Nitab4.5_0000354g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.7e-37 160.2 158 55.7
Haze_22463 Corylus avellana HOM05D003319 ORTHO05D003739 3.8e-37 159.1 158 56.3
Peaxi162Scf00454g00323 Petunia axillaris HOM05D003319 ORTHO05D003739 3.8e-37 159.1 164 53.7
Cfa013800 Carpinus fangiana HOM05D003319 ORTHO05D003739 4.9e-37 158.7 158 55.1
Peaxi162Scf00160g01038 Petunia axillaris HOM05D003319 ORTHO05D003739 4.9e-37 158.7 155 55.5
CiPaw.14G112200 Carya illinoinensis HOM05D003319 ORTHO05D003739 6.4e-37 158.3 182 53.3
Prupe.1G532600 Prunus persica HOM05D003319 ORTHO05D003739 1.1e-36 157.5 163 57.1
QL09p017848 Quercus lobata HOM05D003319 ORTHO05D003739 1.4e-36 157.1 160 55.6
Duzib093G0230 Durio zibethinus HOM05D003319 ORTHO05D003739 1.9e-36 156.8 158 56.3
Solyc12g087970.2 Solanum lycopersicum HOM05D003319 ORTHO05D003739 2.4e-36 156.4 158 54.4
Sopen12g030000 Solanum pennellii HOM05D003319 ORTHO05D003739 2.4e-36 156.4 158 54.4
Lsat_1_v5_gn_9_74001 Lactuca sativa HOM05D003319 ORTHO05D003739 4.2e-36 155.6 158 55.7
ECA232G2539 Erigeron canadensis HOM05D001083 ORTHO05D001637 5.4e-36 155.2 159 56.6
Nitab4.5_0000131g0210 Nicotiana tabacum HOM05D003319 ORTHO05D003739 2.1e-35 153.3 158 53.8
THA.LOC104816794 Tarenaya hassleriana HOM05D003319 ORTHO05D003739 6.0e-35 151.8 160 53.8
Gohir.D01G114100 Gossypium hirsutum HOM05D003319 ORTHO05D003739 1.0e-34 151.0 158 54.4
Gorai.002G139000 Gossypium raimondii HOM05D003319 ORTHO05D003739 1.0e-34 151.0 158 54.4
Gohir.A01G126500 Gossypium hirsutum HOM05D003319 ORTHO05D003739 1.3e-34 150.6 158 55.1
Oeu018565.2 Olea europaea HOM05D003319 ORTHO05D003739 1.3e-34 150.6 159 52.8
Nitab4.5_0005913g0020 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.7e-34 150.2 158 52.5
Potri.002G106500 Populus trichocarpa HOM05D003319 ORTHO05D003739 6.6e-34 148.3 161 54.7
Sabra02G0083800 Salix brachista HOM05D003319 ORTHO05D003739 8.7e-34 147.9 161 54.7
MSTRG.11807 Avicennia marina HOM05D003319 ORTHO05D003739 3.3e-33 146.0 158 52.5
PGSC0003DMG400009342 Solanum tuberosum HOM05D003319 ORTHO05D003739 3.3e-33 146.0 158 51.9
Prupe.1G532700 Prunus persica HOM05D003319 ORTHO05D003739 5.6e-33 145.2 173 51.4
Sc26g0002970 Simmondsia chinensis HOM05D003319 ORTHO05D003739 1.6e-32 143.7 158 52.5
ClCG11G014590 Citrullus lanatus HOM05D003319 ORTHO05D003739 2.1e-32 143.3 158 48.1
Sabra05G0119500 Salix brachista HOM05D003319 ORTHO05D003739 4.8e-32 142.1 180 50.0
CANSAT35G1730 Cannabis sativa HOM05D003319 ORTHO05D003739 6.2e-32 141.7 157 54.1
CDE05G3064 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 8.1e-32 141.4 155 54.2
Cc10_g15920 Coffea canephora HOM05D003319 ORTHO05D003739 1.8e-31 140.2 158 53.8
MD15G1386000 Malus domestica HOM05D003319 ORTHO05D003739 2.4e-31 139.8 162 48.8
CDE11G0791 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 3.1e-31 139.4 155 53.5
SGA_v2.0_scaffold193G40665 Striga asiatica HOM05D003319 ORTHO05D003739 4.0e-31 139.0 160 53.8
TWI36G0459 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 4.0e-31 139.0 158 53.2
Lj4A717T32 Lonicera japonica HOM05D003319 ORTHO05D003739 5.3e-31 138.7 117 69.2
PGR042G0823 Punica granatum HOM05D003319 ORTHO05D003739 5.3e-31 138.7 155 51.0
Lsat_1_v5_gn_6_104940 Lactuca sativa HOM05D003319 ORTHO05D003739 1.2e-30 137.5 161 51.6
Solyc04g076360.4 Solanum lycopersicum HOM05D003319 ORTHO05D003739 1.5e-30 137.1 158 50.0
PSO170G3999 Papaver somniferum HOM05D003319 ORTHO05D003739 2.6e-30 136.3 158 52.5
Sopen00g008100 Solanum pennellii HOM05D003319 ORTHO05D003739 2.6e-30 136.3 158 50.0
TWI56G0998 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 4.5e-30 135.6 161 50.9
COL.COLO4_35252 Corchorus olitorius HOM05D001049 ORTHO05D001986 9.9e-30 134.4 160 51.9
PGR031G0455 Punica granatum HOM05D003319 ORTHO05D003739 1.3e-29 134.0 156 51.3
ECA246G1786 Erigeron canadensis HOM05D003319 ORTHO05D003739 1.7e-29 133.7 159 49.1
PSO210G3859 Papaver somniferum HOM05D003319 ORTHO05D003739 1.7e-29 133.7 158 51.9
CAN.G475.23 Capsicum annuum HOM05D003319 ORTHO05D003739 8.4e-29 131.3 158 44.9
MELO3C011083.2 Cucumis melo HOM05D003319 ORTHO05D003739 1.4e-28 130.6 172 44.8
Phvul.009G036300 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 1.4e-28 130.6 161 49.1
MELO3C003521.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.4e-28 129.8 158 46.2
Carub.0001s0905 Capsella rubella HOM05D003319 ORTHO05D003739 4.2e-28 129.0 167 47.3
Sp1g08300 Schrenkiella parvula HOM05D003319 ORTHO05D003739 5.4e-28 128.6 162 49.4
CsaV3_2G030210 Cucumis sativus L. HOM05D003319 ORTHO05D003739 9.3e-28 127.9 158 47.5
HanXRQChr15g0484821 Helianthus annuus HOM05D003319 ORTHO05D003739 9.3e-28 127.9 165 46.7
Migut.A00432 Erythranthe guttata HOM05D003319 ORTHO05D003739 1.6e-27 127.1 156 50.0
MD08G1198900 Malus domestica HOM05D003319 ORTHO05D003739 1.6e-27 127.1 160 47.5
VMungo1309G1101 Vigna mungo HOM05D003319 ORTHO05D003739 2.1e-27 126.7 161 47.8
ATR0582G130 Amborella trichopoda HOM05D003319 ORTHO05D003739 2.7e-27 126.3 159 51.6
Glyma.04G095300 Glycine max HOM05D003319 ORTHO05D003739 2.7e-27 126.3 145 50.3
RcHm_v2.0_Chr7g0235501 Rosa chinensis HOM05D003319 ORTHO05D003739 2.7e-27 126.3 165 50.3
Sed0025417 Sechium edule HOM05D003319 ORTHO05D003739 4.6e-27 125.6 182 43.4
FAN18G0012 Fragaria x ananassa HOM05D003319 ORTHO05D003739 7.9e-27 124.8 166 47.6
CsaV3_3G048000 Cucumis sativus L. HOM05D003319 ORTHO05D003739 1.0e-26 124.4 158 46.2
arahy.Tifrunner.gnm1.ann1.53Z6YZ Arachis hypogaea HOM05D003319 ORTHO05D003739 1.8e-26 123.6 159 46.5
FAN04G1055 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.8e-26 123.6 164 48.2
FAN13G1335 Fragaria x ananassa HOM05D003319 ORTHO05D003739 2.3e-26 123.2 164 48.2
FvH4_5g34820 Fragaria vesca HOM05D003319 ORTHO05D003739 3.0e-26 122.9 163 47.9
AL1G20260 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 3.9e-26 122.5 162 46.9
arahy.Tifrunner.gnm1.ann1.ET429J Arachis hypogaea HOM05D003319 ORTHO05D003739 5.1e-26 122.1 159 45.9
Sed0024254 Sechium edule HOM05D003319 ORTHO05D003739 6.7e-26 121.7 161 46.0
FAN08G0387 Fragaria x ananassa HOM05D003319 ORTHO05D003739 8.7e-26 121.3 163 47.2
CARHR009680 Cardamine hirsuta HOM05D003319 ORTHO05D003739 1.1e-25 120.9 157 46.5
HanXRQChr05g0163341 Helianthus annuus HOM05D003319 ORTHO05D003739 1.9e-25 120.2 160 47.5
Migut.F01437 Erythranthe guttata HOM05D003319 ORTHO05D003739 2.5e-25 119.8 159 44.0
Aa31LG1G5280 Aethionema arabicum HOM05D003319 ORTHO05D003739 4.3e-25 119.0 172 46.5
Lalb_Chr23g0270031 Lupinus albus HOM05D003319 ORTHO05D003739 4.3e-25 119.0 159 44.7
AT1G09710 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 9.6e-25 117.9 179 42.5
Lj1g0027025 Lotus japonicus HOM05D003319 ORTHO05D003739 1.6e-24 117.1 159 45.3
Aa31LG2G10920 Aethionema arabicum HOM05D003319 ORTHO05D003739 2.8e-24 116.3 155 46.5
Lalb_Chr11g0064951 Lupinus albus HOM05D003319 ORTHO05D003739 3.7e-24 115.9 145 44.8
Actinidia19629 Actinidia chinensis HOM05D003319 ORTHO05D003739 6.2e-24 115.2 154 50.0
Medtr8g024690 Medicago truncatula HOM05D003319 ORTHO05D003739 1.4e-23 114.0 145 44.1
CARHR053790 Cardamine hirsuta HOM05D003319 ORTHO05D003739 1.8e-23 113.6 157 44.6
CAN.G193.10 Capsicum annuum HOM05D003319 ORTHO05D003739 2.4e-23 113.2 166 41.6
TPR.G6339 Trifolium pratense HOM05D003319 ORTHO05D003739 5.3e-23 112.1 159 42.8
arahy.Tifrunner.gnm1.ann1.J3DRUP Arachis hypogaea HOM05D003319 ORTHO05D003739 6.9e-23 111.7 159 44.7
Carub.0002s0638 Capsella rubella HOM05D003319 ORTHO05D003739 6.9e-23 111.7 157 44.6
DCAR_019315 Daucus carota HOM05D003319 ORTHO05D003739 6.9e-23 111.7 135 50.4
PSO478G3694 Papaver somniferum HOM05D003319 ORTHO05D003739 1.2e-22 110.9 157 47.1
Ca_29526_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 1.5e-22 110.5 160 43.1
AT1G58220 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 2.0e-22 110.2 155 45.8
A09p18510 Brassica napus HOM05D003319 ORTHO05D003739 2.0e-22 110.2 164 43.9
BraA09t37477Z Brassica rapa HOM05D003319 ORTHO05D003739 2.0e-22 110.2 164 43.9
Psat5g049040 Pisum sativum HOM05D003319 ORTHO05D003739 2.0e-22 110.2 159 41.5
Lalb_Chr08g0242551 Lupinus albus HOM05D003319 ORTHO05D003739 2.6e-22 109.8 159 43.4
arahy.Tifrunner.gnm1.ann1.S3SE83 Arachis hypogaea HOM05D003319 ORTHO05D003739 3.4e-22 109.4 159 41.5
Thhalv10024079m.g Eutrema salsugineum HOM05D003319 ORTHO05D003739 3.4e-22 109.4 167 41.3
BcaC04g22121 Brassica carinata HOM05D003319 ORTHO05D003739 4.5e-22 109.0 160 43.8
C09p23120 Brassica napus HOM05D003319 ORTHO05D003739 4.5e-22 109.0 160 43.8
BolC9t55230H Brassica oleracea HOM05D003319 ORTHO05D003739 4.5e-22 109.0 160 43.8
C05p07790 Brassica napus HOM05D003319 ORTHO05D003739 5.8e-22 108.6 156 45.5
BolC5t29530H Brassica oleracea HOM05D003319 ORTHO05D003739 5.8e-22 108.6 156 45.5
PSO782G3079 Papaver somniferum HOM05D003319 ORTHO05D003739 5.8e-22 108.6 173 45.1
Ca_23436_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 7.6e-22 108.2 145 43.4
Sp2g05390 Schrenkiella parvula HOM05D003319 ORTHO05D003739 7.6e-22 108.2 155 44.5
Aqoxy5G01378 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 1.3e-21 107.5 165 45.5
AL2G18190 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 1.3e-21 107.5 157 43.9
PSO478G2921 Papaver somniferum HOM05D003319 ORTHO05D003739 1.7e-21 107.1 165 44.2
BraA06t23850Z Brassica rapa HOM05D003319 ORTHO05D003739 2.9e-21 106.3 159 45.9
A01p28300 Brassica napus HOM05D003319 ORTHO05D003739 3.8e-21 105.9 155 44.5
BraA01t02959Z Brassica rapa HOM05D003319 ORTHO05D003739 3.8e-21 105.9 155 44.5
Duzib041G0541 Durio zibethinus HOM05D003319 ORTHO05D003739 4.9e-21 105.5 138 46.4
Phvul.008G182100 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 4.9e-21 105.5 157 44.6
BcaC09g49499 Brassica carinata HOM05D003319 ORTHO05D003739 6.5e-21 105.1 162 43.2
C01p35850 Brassica napus HOM05D003319 ORTHO05D003739 6.5e-21 105.1 162 43.2
BolC1t03546H Brassica oleracea HOM05D003319 ORTHO05D003739 6.5e-21 105.1 162 43.2
Hund04947 Selenicereus undatus HOM05D003319 ORTHO05D003739 8.4e-21 104.8 161 44.7
SEGI_24455 Sequoiadendron giganteum HOM05D003319 ORTHO05D003739 2.5e-20 103.2 146 44.5
Medtr3g100180 Medicago truncatula HOM05D003319 ORTHO05D003739 5.5e-20 102.1 159 40.3
BcaB04g20193 Brassica carinata HOM05D003319 ORTHO05D003739 7.1e-20 101.7 163 41.7
HPP92_016140 Vanilla planifolia HOM05D003319 ORTHO05D003739 3.5e-19 99.4 157 41.4
Hma1.2p1_0616F.1_g189970 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 4.6e-19 99.0 155 43.9
ClCG08G011640 Citrullus lanatus HOM05D003319 ORTHO05D003739 7.9e-19 98.2 129 43.4
PSO478G0048 Papaver somniferum HOM05D003319 ORTHO05D003739 3.0e-18 96.3 184 40.2
A06p06390 Brassica napus HOM05D003319 ORTHO05D003739 3.9e-18 95.9 159 42.8
Glyma.02G214600 Glycine max HOM05D003319 ORTHO05D003739 5.1e-18 95.5 146 41.8
VMungo0647G1715 Vigna mungo HOM05D003319 ORTHO05D003739 8.7e-18 94.7 157 42.0
SHI20380 Sapria himalayana HOM05D003319 ORTHO05D003739 1.9e-17 93.6 129 45.7
PSO478G0452 Papaver somniferum HOM05D003319 ORTHO05D003739 2.5e-17 93.2 172 41.3
AUR62014349 Chenopodium quinoa HOM05D003319 ORTHO05D003739 3.3e-17 92.8 163 41.1
SalBow4G2315 Salvia bowleyana HOM05D003319 ORTHO05D003739 4.3e-17 92.4 219 32.9
Sed0014936 Sechium edule HOM05D003319 ORTHO05D003739 9.6e-17 91.3 132 40.9
unitig_32.g10947 Utricularia gibba HOM05D003319 ORTHO05D003739 1.3e-16 90.9 142 41.5
AUR62019092 Chenopodium quinoa HOM05D003319 ORTHO05D003739 2.1e-16 90.1 155 43.2
Hund17284 Selenicereus undatus HOM05D003319 ORTHO05D003739 2.8e-16 89.7 128 40.6
EL10Ac1g00993 Beta vulgaris HOM05D003319 ORTHO05D003739 2.4e-15 86.7 155 42.6
Glyma.06G097100 Glycine max HOM05D003319 ORTHO05D003739 4.5e-14 82.4 115 41.7
TPR.G35908 Trifolium pratense HOM05D003319 ORTHO05D003739 2.9e-13 79.7 161 36.0
Aqoxy5G01379 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 1.1e-12 77.8 190 34.7
Mapoly0014s0193 Marchantia polymorpha HOM05D003319 ORTHO05D003739 1.6e-11 73.9 186 33.9
Zm00001eb243450 Zea mays HOM05D003319 ORTHO05D003739 7.9e-11 71.6 158 38.0
PSO478G0631 Papaver somniferum HOM05D003319 ORTHO05D003739 1.8e-10 70.5 88 48.9
Os02g0551400 Oryza sativa ssp. japonica HOM05D003319 ORTHO05D003739 3.0e-10 69.7 164 38.4
Nitab4.5_0000048g0160 Nicotiana tabacum HOM05D003319 ORTHO05D003739 8.7e-10 68.2 107 44.9
Pp3c8_16730 Physcomitrium patens HOM05D003319 ORTHO05D003739 9.7e-09 64.7 160 32.5
Psat2g065280 Pisum sativum HOM05D003319 ORTHO05D003739 2.8e-08 63.2 154 33.8
arahy.Tifrunner.gnm1.ann1.1WVB8B Arachis hypogaea HOM05D003319 ORTHO05D003739 1.4e-07 60.8 105 33.3
Hma1.2p1_2397F.1_g321340 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 3.1e-07 59.7 55 63.6
PSO782G3353 Papaver somniferum HOM05D003319 ORTHO05D003739 4.1e-07 59.3 141 34.8
arahy.Tifrunner.gnm1.ann1.30MVJR Arachis hypogaea HOM05D003319 ORTHO05D003739 5.3e-07 58.9 142 31.0
CBR_g9135 Chara braunii HOM05D003319 ORTHO05D003739 9.0e-07 58.2 71 46.5
AUR62002401 Chenopodium quinoa HOM05D003319 ORTHO05D003739 1.0e-05 54.7 133 38.3


User provided reference genes

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