Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 1.8e-128 462.6 240 100.0
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 1.8e-96 356.3 240 81.2
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 4.7e-84 315.1 241 71.8
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 1.8e-83 313.2 240 72.5
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 7.5e-82 307.8 239 71.5
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 1.5e-77 293.5 234 69.2
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 9.5e-77 290.8 234 67.9
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 1.4e-75 287.0 242 69.4
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 2.6e-74 282.7 254 63.8
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 4.4e-74 282.0 240 66.7
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 4.4e-74 282.0 246 69.1
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 1.1e-72 277.3 239 67.4
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 9.5e-69 264.2 241 65.6
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 1.2e-68 263.8 246 63.0
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 2.1e-68 263.1 247 61.5
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 8.1e-68 261.2 248 63.3
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 1.1e-67 260.8 177 78.0
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 1.8e-67 260.0 242 62.8
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 5.2e-67 258.5 246 62.2
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 2.6e-66 256.1 155 83.9
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 3.4e-66 255.8 236 63.1
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 5.8e-66 255.0 259 57.1
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 5.8e-66 255.0 256 59.8
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 7.6e-66 254.6 241 63.1
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 7.6e-66 254.6 246 61.0
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 9.9e-66 254.2 248 59.3
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 9.9e-66 254.2 186 72.0
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 1.3e-65 253.8 222 64.0
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 1.7e-65 253.4 242 62.0
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 2.2e-65 253.1 234 64.1
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 4.9e-65 251.9 242 61.6
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 6.4e-65 251.5 215 64.7
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.1e-64 250.8 232 62.9
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 1.4e-64 250.4 237 62.9
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.4e-64 249.6 198 66.7
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 2.4e-64 249.6 216 66.2
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 3.2e-64 249.2 197 66.5
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 5.4e-64 248.4 190 70.5
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 5.4e-64 248.4 234 59.0
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 5.4e-64 248.4 250 60.8
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 7.1e-64 248.1 237 59.9
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 7.1e-64 248.1 198 66.2
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 7.1e-64 248.1 198 66.2
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 9.2e-64 247.7 259 56.8
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 1.6e-63 246.9 250 57.6
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 2.7e-63 246.1 247 58.3
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 2.7e-63 246.1 201 66.7
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 4.6e-63 245.4 250 57.6
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 7.8e-63 244.6 209 63.6
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 6.6e-62 241.5 236 58.9
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.1e-61 240.7 155 77.4
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 1.5e-61 240.4 155 79.4
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 5.6e-61 238.4 248 58.5
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 1.1e-59 234.2 192 64.6
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 3.1e-59 232.6 213 62.9
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 5.2e-59 231.9 213 60.6
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 5.2e-59 231.9 224 60.3
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.9e-57 225.3 276 50.4
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 3.5e-55 219.2 155 71.6
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 1.7e-54 216.9 198 58.1
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 2.1e-52 209.9 216 58.8
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 3.8e-49 199.1 185 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 8.4e-49 198.0 155 63.9
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 2.6e-42 176.4 163 55.8
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 1.4e-40 170.6 96 84.4
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 4.5e-34 149.1 198 47.5
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 2.3e-30 136.7 89 76.4
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 4.5e-26 122.5 183 44.8
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 7.2e-24 115.2 135 48.9
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 4.1e-19 99.4 135 39.3
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 1.6e-15 87.4 132 40.2
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 6.1e-15 85.5 50 82.0
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 7.9e-15 85.1 50 80.0
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 2.3e-14 83.6 48 83.3
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.9e-14 82.8 46 87.0
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.3e-13 79.7 47 80.9
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 7.4e-13 78.6 48 79.2
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 2.2e-12 77.0 59 64.4
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 5.3e-11 72.4 47 76.6
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 9.4e-08 61.6 179 25.7
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 4.7e-07 59.3 164 28.7
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 2.3e-06 57.0 117 33.3
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 3.0e-06 56.6 29 93.1
PRCOL_00005335 Prasinoderma coloniale HOM05D016266 ORTHO05D019595 3.9e-06 56.2 94 29.8


User provided reference genes

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