Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.2e-31 140.2 142 100.0
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 5.2e-22 108.2 109 83.5
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 3.4e-21 105.5 76 81.6
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.3e-20 101.3 77 79.2
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.1e-19 100.5 73 80.8
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.4e-19 100.1 77 77.9
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.1e-19 99.0 97 86.6
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.5e-18 95.5 70 82.9
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.5e-18 95.5 70 82.9
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.5e-18 95.1 101 82.2
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 3.8e-17 92.0 105 73.3
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 6.5e-17 91.3 72 76.4
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.5e-16 89.4 62 83.9
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 2.5e-16 89.4 76 71.1
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 4.2e-16 88.6 73 74.0
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.2e-16 87.8 73 72.6
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.6e-15 86.7 58 84.5
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.6e-15 86.7 95 73.7
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 3.6e-15 85.5 71 71.8
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.0e-14 84.0 65 76.9
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 1.8e-14 83.2 61 75.4
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.5e-13 80.1 69 68.1
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.0e-13 79.7 77 66.2
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 2.6e-13 79.3 57 82.5
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.4e-13 79.0 65 69.2
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.4e-13 78.6 66 74.2
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 5.7e-13 78.2 101 70.3
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.3e-12 77.0 63 71.4
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.3e-12 77.0 59 74.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.3e-12 77.0 59 74.6
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.7e-12 76.6 62 71.0
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.7e-12 75.5 61 70.5
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 4.9e-12 75.1 77 92.2
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 6.3e-12 74.7 79 64.6
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 6.3e-12 74.7 58 75.9
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.8e-11 73.2 65 63.1
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.8e-11 73.2 59 76.3
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 1.8e-11 73.2 110 49.1
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 3.1e-11 72.4 109 67.0
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.1e-11 72.0 58 70.7
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 5.4e-11 71.6 58 74.1
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.2e-10 70.5 70 60.0
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.6e-10 70.1 60 68.3
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.6e-10 70.1 109 67.9
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.6e-10 70.1 47 85.1
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.6e-10 70.1 57 71.9
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 2.0e-10 69.7 58 74.1
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.0e-10 69.7 112 45.5
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 3.5e-10 68.9 58 70.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 3.5e-10 68.9 67 61.2
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.5e-10 68.9 55 72.7
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.0e-09 67.4 56 67.9
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.0e-09 67.4 62 66.1
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.3e-09 67.0 72 59.7
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.3e-09 67.0 63 68.3
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 1.7e-09 66.6 47 83.0
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.7e-09 66.6 49 77.6
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 2.9e-09 65.9 60 65.0
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.9e-09 65.9 62 62.9
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.9e-09 65.9 51 76.5
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 3.8e-09 65.5 58 69.0
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 5.0e-09 65.1 47 78.7
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 6.6e-09 64.7 55 69.1
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 6.6e-09 64.7 56 66.1
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 6.6e-09 64.7 56 71.4
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 6.6e-09 64.7 46 78.3
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 8.6e-09 64.3 71 57.7
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 8.6e-09 64.3 71 57.7
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.1e-08 63.9 57 66.7
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 1.1e-08 63.9 57 68.4
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 1.5e-08 63.5 62 66.1
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.5e-08 63.5 64 65.6
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.9e-08 63.2 59 62.7
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.5e-08 62.8 58 62.1
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.5e-08 62.8 47 76.6
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.5e-08 62.8 67 59.7
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.3e-08 62.4 52 69.2
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.3e-08 62.4 60 65.0
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 3.3e-08 62.4 54 68.5
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 4.3e-08 62.0 47 76.6
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 4.3e-08 62.0 59 59.3
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 7.3e-08 61.2 57 64.9
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 7.3e-08 61.2 46 76.1
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.3e-08 61.2 56 64.3
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 9.5e-08 60.8 79 51.9
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 9.5e-08 60.8 49 71.4
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 9.5e-08 60.8 49 73.5
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.2e-07 60.5 71 56.3
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.6e-07 60.1 56 66.1
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.1e-07 59.7 67 52.2
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.1e-07 59.7 45 73.3
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 2.1e-07 59.7 49 71.4
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.8e-07 59.3 51 66.7
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.8e-07 59.3 58 60.3
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 3.6e-07 58.9 40 82.5
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.6e-07 58.9 48 70.8
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 3.6e-07 58.9 49 69.4
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.6e-07 58.9 56 62.5
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 3.6e-07 58.9 44 72.7
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.6e-07 58.9 65 55.4
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 4.7e-07 58.5 51 64.7
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.7e-07 58.5 58 62.1
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 6.1e-07 58.2 47 74.5
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 6.1e-07 58.2 73 53.4
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 8.0e-07 57.8 45 75.6
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 8.0e-07 57.8 46 71.7
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.0e-07 57.8 48 68.8
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 8.0e-07 57.8 81 48.1
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 8.0e-07 57.8 48 66.7
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 8.0e-07 57.8 64 54.7
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.8e-06 56.6 56 60.7
ClCG02G000100 Citrullus lanatus HOM05D003347 ORTHO05D003821 2.3e-06 56.2 38 78.9
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.3e-06 56.2 49 69.4
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.0e-06 55.8 47 66.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 3.0e-06 55.8 45 66.7
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 3.0e-06 55.8 47 66.0
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 5.2e-06 55.1 48 66.7
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 5.2e-06 55.1 48 66.7
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.9e-06 54.3 50 68.0


User provided reference genes

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