Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 0.0e+00 1162.1 600 100.0
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 3.3e-280 968.0 554 85.7
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.3e-276 956.1 566 82.2
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 2.9e-276 954.9 560 81.8
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 6.5e-276 953.7 558 81.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.5e-275 952.6 558 81.9
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 2.5e-275 951.8 576 80.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.2e-275 951.4 575 79.8
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 3.2e-275 951.4 580 80.2
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.2e-274 949.5 552 82.6
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.6e-274 948.0 553 83.7
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 5.2e-273 944.1 558 82.3
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.2e-273 944.1 552 82.1
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.5e-272 942.6 552 81.9
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 9.8e-272 939.9 552 82.8
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 2.2e-271 938.7 553 81.9
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 8.3e-271 936.8 579 80.7
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.8e-270 935.6 552 82.6
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 9.1e-270 933.3 558 80.5
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.2e-269 932.9 575 79.3
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.7e-269 931.8 558 80.5
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.5e-269 931.4 585 79.1
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 5.9e-269 930.6 555 79.8
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.3e-268 928.7 583 76.0
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.9e-268 928.3 583 76.2
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 8.6e-268 926.8 552 81.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 2.5e-267 925.2 590 75.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 3.2e-267 924.9 559 80.1
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 5.5e-267 924.1 559 80.0
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.6e-266 922.5 556 80.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 4.7e-266 921.0 590 77.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 4.7e-266 921.0 552 81.7
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 6.1e-266 920.6 560 79.3
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.0e-265 919.8 580 79.8
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.8e-265 919.1 552 80.1
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.3e-265 918.7 566 79.2
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 8.9e-265 916.8 585 79.1
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.2e-264 916.4 553 80.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.6e-264 915.2 552 79.5
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.6e-264 915.2 552 79.5
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.6e-264 915.2 552 79.5
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 3.4e-264 914.8 575 77.9
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 4.4e-264 914.4 552 80.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 2.2e-263 912.1 579 78.1
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.8e-263 911.8 577 77.5
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.1e-262 909.8 555 78.6
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.4e-262 908.7 581 76.6
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.1e-262 907.9 592 75.8
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.4e-262 907.5 592 75.8
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 5.4e-262 907.5 554 79.6
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.0e-262 907.1 592 75.8
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.6e-261 906.0 592 75.8
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 7.8e-261 903.7 554 80.0
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-259 899.8 547 80.1
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.5e-259 899.4 552 77.9
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 4.3e-259 897.9 560 76.8
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 7.3e-259 897.1 576 76.6
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.2e-258 896.3 554 78.5
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.2e-258 896.3 580 75.7
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.1e-258 895.6 553 77.0
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 6.1e-258 894.0 553 76.7
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 8.0e-258 893.6 682 67.7
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 8.0e-258 893.6 552 78.8
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.8e-257 892.5 558 77.1
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.0e-257 891.3 588 75.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.0e-256 889.0 588 75.3
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 9.8e-256 886.7 579 74.1
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 9.8e-256 886.7 577 75.6
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 9.8e-256 886.7 558 77.8
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.3e-255 886.3 555 78.0
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.7e-255 885.9 560 76.6
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 6.4e-255 884.0 552 77.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.8e-254 882.5 552 77.4
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.4e-254 882.1 579 75.3
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 5.4e-254 880.9 535 78.7
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 9.2e-254 880.2 578 75.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 3.5e-253 878.2 560 77.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 4.6e-253 877.9 579 75.1
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.3e-252 875.5 553 76.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 3.0e-252 875.2 573 75.2
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.5e-251 872.8 555 76.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 5.6e-251 870.9 526 80.6
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.8e-250 868.6 503 84.5
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.7e-250 867.8 576 73.6
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 6.2e-250 867.5 590 73.2
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 6.2e-250 867.5 585 73.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.4e-249 866.3 551 75.3
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.3e-249 865.5 583 73.6
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 4.0e-249 864.8 580 74.1
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 4.0e-249 864.8 554 75.8
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 5.2e-249 864.4 582 73.5
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 5.2e-249 864.4 556 75.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 8.9e-249 863.6 551 75.1
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.2e-248 863.2 555 75.5
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.5e-248 862.8 556 75.4
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 9.8e-248 860.1 576 73.3
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.9e-246 855.9 555 75.0
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 3.2e-246 855.1 552 75.0
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 4.1e-246 854.7 554 74.9
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 5.4e-246 854.4 591 72.1
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 9.2e-246 853.6 553 76.1
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 6.0e-245 850.9 553 74.9
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 7.8e-245 850.5 552 74.5
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 7.8e-245 850.5 586 75.4
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.7e-244 849.4 552 74.6
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.3e-244 849.0 554 73.8
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 2.3e-244 849.0 552 74.5
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 2.3e-244 849.0 552 74.5
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.3e-244 849.0 576 72.0
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 3.0e-244 848.6 554 74.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 3.0e-244 848.6 552 74.3
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 6.6e-244 847.4 554 74.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 8.6e-244 847.0 557 73.4
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 1.1e-243 846.7 552 74.5
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.1e-243 846.7 554 73.8
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.5e-243 845.5 554 73.6
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 9.5e-243 843.6 576 72.6
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.4e-240 835.1 586 71.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 2.8e-234 815.5 905 51.8
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.4e-230 803.1 481 81.7
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 9.2e-230 800.4 501 77.6
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 8.7e-228 793.9 558 71.0
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 2.8e-226 788.9 552 69.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 5.2e-225 784.6 559 68.0
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.8e-218 762.3 866 49.2
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.2e-200 703.7 552 64.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.2e-199 699.5 543 68.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 6.5e-199 698.0 552 64.3
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.1e-198 697.2 572 60.8
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.1e-195 687.2 453 72.0
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.5e-195 686.8 386 85.5
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 7.4e-187 657.9 565 56.1
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 3.7e-162 575.9 323 87.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.9e-152 542.0 415 68.2
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 5.2e-148 528.9 401 69.3
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 3.3e-142 509.6 569 46.6
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.6e-131 473.4 421 62.7
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 5.8e-131 472.2 290 81.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.9e-106 389.4 333 57.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 2.1e-93 347.4 410 44.6
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.7e-93 346.7 215 75.8
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 9.0e-92 342.0 468 42.3
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 1.3e-90 338.2 187 88.2
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 6.7e-87 325.9 513 36.5
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.9e-86 324.3 205 73.7
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.3e-77 292.7 209 70.3
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 3.4e-75 287.0 239 65.3
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 3.4e-75 287.0 239 65.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.7e-69 268.1 170 74.7
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.5e-67 261.5 169 73.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 4.5e-67 260.0 582 33.3
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 5.5e-57 226.5 367 34.9
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.9e-51 206.5 226 50.4
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.5e-41 175.3 86 95.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 8.9e-31 139.4 110 60.0
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.0e-30 138.3 72 90.3
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 9.2e-28 129.4 77 75.3
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 1.2e-27 129.0 73 78.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.3e-15 88.2 85 55.3
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.5e-14 83.2 49 71.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.5e-14 83.2 49 71.4
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.7e-13 82.0 42 83.3
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 6.4e-13 80.1 47 72.3
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 4.1e-12 77.4 43 76.7
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 6.6e-10 70.1 51 60.8


User provided reference genes

Program Settings