Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.1e-103 379.8 175 100.0
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 3.2e-98 361.7 173 94.2
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.2e-97 359.8 173 94.2
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 2.1e-97 359.0 173 93.6
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 3.5e-97 358.2 173 93.6
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 6.0e-97 357.5 173 94.2
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 6.0e-97 357.5 173 94.2
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 6.0e-97 357.5 173 94.2
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 7.9e-97 357.1 173 93.6
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 7.9e-97 357.1 173 93.6
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 1.0e-96 356.7 173 94.2
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 1.3e-96 356.3 173 93.1
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.8e-96 355.9 173 92.5
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 1.8e-96 355.9 173 93.6
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 93.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 91.9
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 93.1
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 93.1
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 93.1
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 92.5
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.3e-96 355.5 173 91.9
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.1
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.1
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 92.5
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.1
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.1
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.1
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.6
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 173 93.6
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 3.9e-96 354.8 173 91.9
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 3.9e-96 354.8 173 93.1
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 5.1e-96 354.4 173 93.1
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 5.1e-96 354.4 173 93.6
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 5.1e-96 354.4 173 92.5
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 8.7e-96 353.6 173 93.1
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 8.7e-96 353.6 173 93.1
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 8.7e-96 353.6 173 93.1
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.1e-95 353.2 173 91.9
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.1e-95 353.2 173 92.5
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 1.1e-95 353.2 171 93.6
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.5e-95 352.8 173 91.9
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 1.9e-95 352.4 173 91.9
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.9e-95 352.4 173 91.3
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 2.5e-95 352.1 173 92.5
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.5e-95 352.1 173 91.9
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 3.3e-95 351.7 173 92.5
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 3.3e-95 351.7 172 91.9
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 3.3e-95 351.7 173 91.3
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.3e-95 351.7 173 91.9
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 91.3
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 91.3
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 90.8
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 92.5
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 91.9
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 91.9
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 91.3
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 92.5
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 5.7e-95 350.9 173 91.3
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 5.7e-95 350.9 171 90.6
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 5.7e-95 350.9 173 91.3
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 5.7e-95 350.9 173 91.3
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 7.4e-95 350.5 173 90.8
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 9.6e-95 350.1 173 91.9
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 9.6e-95 350.1 173 91.9
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 9.6e-95 350.1 173 91.9
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.3e-94 349.7 173 91.3
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.3e-94 349.7 173 90.8
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.6e-94 349.4 173 90.8
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 1.6e-94 349.4 173 90.2
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 2.1e-94 349.0 172 91.3
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 2.1e-94 349.0 173 90.8
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 2.1e-94 349.0 173 90.8
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 3.7e-94 348.2 173 89.6
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 3.7e-94 348.2 172 90.7
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 4.8e-94 347.8 173 89.6
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 4.8e-94 347.8 173 89.6
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 6.2e-94 347.4 173 89.6
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 1.1e-93 346.7 173 89.6
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 90.2
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 89.6
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.4e-93 346.3 172 90.7
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.4e-93 346.3 172 90.7
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 89.6
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 91.9
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.4e-93 346.3 173 90.2
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 2.4e-93 345.5 173 89.6
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 2.4e-93 345.5 173 89.6
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 3.1e-93 345.1 173 89.6
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 3.1e-93 345.1 173 89.6
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 3.1e-93 345.1 173 89.6
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 3.1e-93 345.1 173 89.6
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 3.1e-93 345.1 173 89.6
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 3.1e-93 345.1 173 90.2
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 4.0e-93 344.7 173 89.0
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 4.0e-93 344.7 173 89.6
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 5.3e-93 344.4 173 89.0
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 5.3e-93 344.4 173 89.0
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 6.9e-93 344.0 174 91.4
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 9.0e-93 343.6 173 89.0
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.5e-92 342.8 173 89.6
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 1.5e-92 342.8 173 89.0
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 2.6e-92 342.0 173 89.0
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 2.6e-92 342.0 173 87.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 2.6e-92 342.0 173 88.4
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 5.8e-92 340.9 173 88.4
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.3e-91 339.7 173 90.2
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 8.4e-91 337.0 173 89.0
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 1.2e-89 333.2 173 87.3
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 2.3e-88 328.9 242 67.4
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 3.9e-88 328.2 173 83.8
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 8.7e-88 327.0 173 82.7
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 7.4e-87 323.9 172 82.6
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 3.4e-84 315.1 169 82.8
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 1.1e-79 300.1 167 77.8
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 1.5e-79 299.7 148 89.2
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 5.7e-79 297.7 179 80.4
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 3.1e-77 292.0 173 74.6
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 6.9e-77 290.8 172 73.8
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 7.9e-73 277.3 165 70.3
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 1.4e-72 276.6 132 94.7
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.7e-70 269.6 131 91.6
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 2.2e-70 269.2 131 92.4
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 4.8e-70 268.1 167 77.2
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 3.2e-66 255.4 164 67.7
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 2.4e-61 239.2 125 87.2
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 4.7e-57 224.9 124 82.3
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.8e-56 223.0 117 85.5
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 5.2e-56 221.5 112 89.3
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.7e-54 216.5 114 88.6
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.4e-53 213.4 125 77.6
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 3.8e-51 205.3 171 53.2
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 3.2e-50 202.2 112 77.7
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 1.0e-48 197.2 104 86.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.6e-44 183.3 141 65.2
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.0e-43 180.6 95 88.4
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 2.0e-36 156.4 88 81.8
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 5.6e-34 148.3 175 49.7
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 3.4e-31 139.0 109 62.4
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 4.9e-30 135.2 114 61.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 6.0e-28 128.3 60 93.3
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 2.9e-22 109.4 92 56.5


User provided reference genes

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