Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 3.8e-134 481.5 237 100.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.2e-85 318.5 225 66.7
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.0e-83 312.4 229 67.7
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.6e-82 309.3 229 67.2
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.4e-82 307.8 217 64.5
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.8e-81 305.8 222 66.2
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.1e-80 303.9 208 69.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.0e-78 297.4 226 63.3
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.3e-78 297.0 211 64.5
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 3.8e-78 295.4 228 67.5
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.8e-78 295.4 223 63.2
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 6.5e-78 294.7 200 65.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.1e-77 293.9 208 67.8
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.5e-77 293.5 210 66.2
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.5e-77 292.7 203 65.5
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 4.2e-77 292.0 213 62.9
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.5e-77 291.6 224 64.7
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.2e-76 290.4 231 62.8
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 2.7e-76 289.3 217 59.4
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.6e-76 288.9 208 66.8
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 4.7e-76 288.5 208 64.4
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 4.7e-76 288.5 232 61.2
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 6.1e-76 288.1 219 60.7
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 6.1e-76 288.1 213 66.2
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 1.4e-75 287.0 215 63.7
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.8e-75 286.6 211 63.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.3e-75 286.2 222 63.1
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 3.9e-75 285.4 220 65.5
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.2e-75 285.0 225 63.6
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.1e-74 283.9 232 61.6
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.0e-74 283.1 202 63.4
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.0e-74 283.1 210 64.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.3e-74 282.3 227 59.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 7.4e-74 281.2 225 61.8
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.7e-73 280.0 226 61.5
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.8e-73 279.3 218 59.6
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.7e-73 278.9 216 63.0
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.7e-73 278.9 216 63.0
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.8e-73 278.5 210 63.3
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 8.2e-73 277.7 205 60.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-72 277.3 218 61.9
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.8e-72 276.6 200 65.0
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.1e-72 275.4 225 56.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 4.1e-72 275.4 217 61.8
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 4.1e-72 275.4 222 61.7
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.3e-72 275.0 218 61.9
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 7.0e-72 274.6 228 58.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 9.1e-72 274.2 226 59.7
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.2e-71 273.9 194 67.5
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.2e-71 273.9 219 61.2
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.6e-71 273.5 210 60.0
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 4.5e-71 271.9 226 59.7
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 4.5e-71 271.9 205 59.0
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.2e-70 269.6 218 57.8
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.2e-70 269.6 215 60.9
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.2e-70 269.6 216 60.6
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.2e-70 269.6 216 60.6
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.9e-70 269.2 223 60.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.9e-70 269.2 215 63.3
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.0e-70 268.5 218 61.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 6.5e-70 268.1 217 59.4
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 6.5e-70 268.1 222 57.7
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.9e-69 266.5 229 57.6
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.5e-69 266.2 203 63.5
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.2e-69 265.8 209 63.2
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 5.5e-69 265.0 229 57.6
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.5e-69 265.0 225 58.7
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 5.5e-69 265.0 221 59.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 9.4e-69 264.2 234 56.8
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.2e-68 263.8 214 56.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.1e-68 263.1 205 61.0
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.7e-68 262.7 212 58.5
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 3.6e-68 262.3 200 63.0
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.7e-68 261.9 208 61.1
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 4.7e-68 261.9 217 58.5
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 4.7e-68 261.9 220 60.0
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 4.7e-68 261.9 238 56.7
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 6.1e-68 261.5 229 56.3
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.0e-67 260.8 208 60.1
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.4e-67 260.4 213 59.2
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.4e-67 260.4 202 61.9
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.8e-67 260.0 229 55.9
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 2.3e-67 259.6 206 57.8
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 4.0e-67 258.8 210 60.5
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 6.8e-67 258.1 214 58.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 8.8e-67 257.7 225 57.3
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.5e-66 256.9 189 64.6
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.3e-65 253.8 219 55.3
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.8e-65 252.7 193 60.6
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.1e-64 250.8 210 58.1
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.8e-64 250.0 224 53.1
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.4e-64 249.6 220 54.1
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.4e-64 249.6 181 66.3
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.0e-63 246.5 208 58.2
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.7e-63 246.1 197 58.9
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 2.7e-63 246.1 207 58.9
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 7.7e-63 244.6 222 55.0
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.8e-62 242.3 216 55.1
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 8.5e-62 241.1 216 54.6
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.5e-61 240.4 213 56.8
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.5e-61 239.6 209 56.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 3.2e-61 239.2 207 56.5
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 7.2e-61 238.0 207 56.0
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.4e-61 237.7 208 55.8
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 9.4e-61 237.7 207 56.5
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-60 236.5 220 55.0
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 4.7e-60 235.3 223 53.4
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.4e-59 233.8 202 56.4
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 2.3e-59 233.0 208 51.9
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 3.0e-59 232.6 209 55.0
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 4.0e-59 232.3 217 53.9
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 5.2e-59 231.9 208 55.8
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.5e-58 228.0 202 55.0
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 1.3e-57 227.3 197 55.3
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-57 227.3 209 55.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.7e-57 226.9 218 52.8
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-57 226.9 213 53.5
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.7e-57 226.9 217 53.0
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.2e-57 226.5 217 53.0
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.7e-57 225.7 207 54.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 6.3e-57 224.9 216 52.3
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 8.3e-57 224.6 207 55.1
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 8.3e-57 224.6 206 53.4
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-56 224.2 216 51.9
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.1e-56 224.2 206 52.4
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-56 223.4 207 53.1
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-56 223.0 213 53.1
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-56 223.0 213 53.1
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 3.1e-56 222.6 223 50.7
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.0e-56 221.5 203 53.7
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.2e-55 220.7 239 48.5
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-55 220.7 223 49.3
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-55 220.3 207 52.7
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.7e-55 219.5 171 62.0
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.5e-55 219.2 198 51.0
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 8.6e-54 214.5 231 49.4
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.9e-53 213.4 127 78.0
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.5e-53 213.0 232 49.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.6e-52 210.3 232 48.7
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.4e-50 202.6 165 60.6
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 9.8e-50 201.1 200 54.5
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.8e-49 199.5 201 47.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 3.7e-49 199.1 206 51.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 4.1e-48 195.7 223 48.4
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.9e-47 191.8 143 62.2
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.4e-42 176.0 139 62.6
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 4.9e-41 172.2 174 51.1
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.0e-38 164.5 208 42.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 3.0e-38 162.9 214 38.8
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.5e-37 160.6 101 72.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.2e-35 152.1 116 62.9
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 7.5e-34 148.3 152 52.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 4.9e-33 145.6 131 52.7
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.4e-32 144.1 165 46.7
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 5.4e-32 142.1 115 60.9
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.2e-31 141.0 107 59.8
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.3e-30 137.5 156 48.1
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-28 131.0 110 58.2
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.2e-28 128.6 115 55.7
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 4.4e-26 122.5 103 55.3
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 4.1e-24 115.9 149 38.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 4.1e-24 115.9 110 50.9
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 7.1e-24 115.2 110 50.9
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 6.0e-23 112.1 226 31.9
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.0e-22 109.8 90 56.7
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.5e-21 107.5 98 51.0
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 4.3e-21 105.9 101 50.5
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 7.3e-21 105.1 135 41.5
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.2e-20 104.4 87 60.9
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-19 99.4 86 53.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 7.6e-18 95.1 84 52.4
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 9.9e-18 94.7 125 46.4
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.9e-16 90.5 90 50.0
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-16 90.1 85 49.4
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 8.7e-14 81.6 77 48.1
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.4e-11 74.3 63 49.2
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-11 72.8 58 56.9
CDE02G3279 Ceratophyllum demersum HOM05D000901 ORTHO05D128872 6.0e-07 58.9 38 63.2


User provided reference genes

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