Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 6.2e-219 763.8 387 100.0
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 8.8e-149 530.8 389 68.9
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 6.3e-147 524.6 389 68.1
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 2.0e-145 519.6 389 69.2
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 5.0e-144 515.0 390 66.9
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.0e-136 490.7 375 66.9
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 4.7e-134 481.9 388 62.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.7e-131 473.4 388 62.4
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 5.0e-128 461.8 392 61.7
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 6.1e-126 454.9 389 59.1
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 9.8e-124 447.6 388 58.8
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 9.8e-124 447.6 394 60.4
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.2e-123 446.4 394 59.9
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.9e-123 446.0 389 60.4
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.4e-122 441.8 388 59.5
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.0e-120 437.6 373 60.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.9e-119 433.3 391 57.5
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.5e-119 433.0 388 59.0
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 5.6e-119 431.8 388 56.2
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.8e-118 429.5 392 58.4
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 6.2e-118 428.3 392 57.4
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.3e-117 426.4 365 60.0
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 2.6e-116 422.9 390 55.9
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 5.8e-116 421.8 387 56.8
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 7.5e-116 421.4 388 56.4
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.9e-114 416.8 387 56.8
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.9e-114 416.8 388 57.2
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-114 416.8 388 57.5
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.6e-113 412.1 389 56.3
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-112 410.6 389 56.3
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.7e-112 410.2 392 54.3
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.9e-112 409.1 392 54.8
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.3e-111 406.0 391 54.5
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 4.3e-111 405.6 393 54.7
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.2e-110 404.1 399 56.1
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 4.7e-110 402.1 409 51.8
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.8e-109 400.2 393 53.4
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 4.0e-109 399.1 395 53.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.0e-109 399.1 388 55.2
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-108 397.5 388 54.6
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 2.0e-108 396.7 396 54.8
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 2.2e-107 393.3 378 53.4
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 2.2e-107 393.3 398 53.5
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.9e-107 392.1 394 54.1
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.4e-106 390.6 393 53.7
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.0e-104 384.4 391 51.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.7e-104 383.6 391 51.9
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 3.0e-104 382.9 393 51.7
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 3.9e-104 382.5 392 54.6
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 6.6e-104 381.7 392 53.6
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 8.6e-104 381.3 392 54.3
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.1e-103 380.9 390 52.6
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.5e-103 380.6 393 52.2
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 2.5e-103 379.8 394 52.3
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-103 379.8 396 50.5
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.5e-103 379.8 392 51.5
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 4.3e-103 379.0 393 50.6
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 4.3e-103 379.0 401 54.1
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 5.6e-103 378.6 401 53.9
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.6e-102 377.1 391 52.7
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.1e-102 376.7 396 50.3
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-101 373.6 394 49.5
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.1e-101 372.9 388 52.6
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 5.2e-101 372.1 394 50.3
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 6.8e-101 371.7 394 51.8
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 6.8e-101 371.7 394 51.8
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-100 370.9 401 52.9
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.4e-100 369.0 393 48.6
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 9.9e-100 367.9 393 52.9
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.3e-99 367.5 392 52.6
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 2.2e-99 366.7 372 54.3
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.9e-99 366.3 394 50.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.8e-99 365.9 394 51.3
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.4e-98 364.0 387 53.7
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 7.1e-98 361.7 394 48.5
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 9.2e-98 361.3 401 49.9
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.2e-97 360.9 392 50.5
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.6e-97 360.5 393 48.6
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 4.6e-97 359.0 393 49.1
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 5.1e-96 355.5 391 50.1
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 1.5e-95 354.0 392 47.7
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.5e-95 354.0 390 50.0
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.5e-95 354.0 394 49.5
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.5e-95 353.2 390 50.8
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 4.7e-94 349.0 394 48.2
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.4e-93 347.4 425 48.5
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.5e-92 344.0 389 47.3
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-92 343.6 393 46.8
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.0e-92 343.6 429 47.6
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 4.4e-92 342.4 393 47.1
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 4.4e-92 342.4 399 47.9
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.9e-91 339.7 393 46.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 4.9e-91 339.0 399 47.4
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.9e-91 339.0 376 52.4
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 7.1e-90 335.1 390 46.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 2.1e-89 333.6 394 45.7
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 3.5e-89 332.8 390 49.5
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 5.1e-88 328.9 391 48.8
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.3e-87 325.1 396 45.7
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 3.6e-86 322.8 331 51.7
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.4e-85 320.9 390 45.4
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.1e-85 319.7 373 47.2
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.7e-83 313.9 409 44.5
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.7e-81 306.6 391 43.7
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.8e-80 303.9 373 47.5
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 9.0e-77 291.6 374 45.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.1e-69 268.1 323 46.7
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.5e-68 264.2 375 38.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.1e-66 258.1 356 39.9
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.9e-66 257.3 390 39.5
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.9e-64 249.6 390 38.7
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.3e-59 234.6 392 35.2
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.6e-57 227.6 254 52.8
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.6e-57 227.6 172 65.7
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.8e-56 224.2 306 46.4
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 6.3e-54 215.7 210 54.3
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 3.8e-51 206.5 427 30.9
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.2e-50 203.0 395 33.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.6e-49 201.1 416 31.5
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.1e-45 186.8 455 30.5
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 5.3e-45 186.0 439 30.5
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 7.0e-45 185.7 153 61.4
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.5e-44 183.3 480 28.1
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 5.5e-42 176.0 340 34.1
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 6.1e-41 172.6 180 47.8
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 4.4e-39 166.4 423 29.8
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 9.7e-39 165.2 430 29.5
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 3.8e-35 153.3 128 56.2
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.5e-34 150.6 400 29.2
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.6e-33 147.9 199 39.7
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 3.6e-33 146.7 393 29.3
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-31 140.2 460 28.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-28 131.7 199 36.7
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 3.8e-19 100.1 84 58.3
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 8.9e-16 89.0 67 52.2
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 3.4e-15 87.0 76 51.3
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 2.5e-10 70.9 62 53.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.3e-10 70.1 80 48.8
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.0e-08 65.5 226 28.8
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.8e-07 58.9 98 38.8


User provided reference genes

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