Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 1.2e-75 286.6 165 100.0
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 1.3e-48 196.8 175 72.6
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 2.9e-48 195.7 162 72.2
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 3.7e-48 195.3 167 73.1
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 8.3e-48 194.1 168 73.2
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 1.1e-47 193.7 175 73.7
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 1.1e-47 193.7 165 75.2
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 1.4e-47 193.4 167 71.9
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 1.9e-47 193.0 171 73.7
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 1.9e-47 193.0 158 75.9
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 2.4e-47 192.6 170 72.4
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 3.2e-47 192.2 167 75.4
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 3.2e-47 192.2 170 72.4
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 4.1e-47 191.8 169 74.0
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 7.1e-47 191.0 153 76.5
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 9.2e-47 190.7 168 72.0
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 1.2e-46 190.3 166 72.3
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 2.1e-46 189.5 141 79.4
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 2.7e-46 189.1 165 73.3
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 2.7e-46 189.1 165 73.3
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 3.5e-46 188.7 159 75.5
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 6.0e-46 188.0 170 71.8
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 6.0e-46 188.0 168 71.4
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 1.0e-45 187.2 166 74.1
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 1.3e-45 186.8 171 71.9
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 1.3e-45 186.8 169 71.6
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 2.3e-45 186.0 168 70.2
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 2.3e-45 186.0 153 77.1
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 3.0e-45 185.7 166 70.5
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 3.0e-45 185.7 169 71.0
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 5.1e-45 184.9 168 72.0
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 6.6e-45 184.5 166 72.3
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 6.6e-45 184.5 169 70.4
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 6.6e-45 184.5 166 69.9
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 8.6e-45 184.1 169 72.2
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 8.6e-45 184.1 177 68.4
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 1.5e-44 183.3 170 68.8
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 1.9e-44 183.0 149 77.9
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 1.9e-44 183.0 165 70.3
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 3.3e-44 182.2 168 70.8
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 3.3e-44 182.2 166 69.9
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 3.3e-44 182.2 169 68.0
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 4.3e-44 181.8 161 73.9
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 5.6e-44 181.4 163 72.4
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 5.6e-44 181.4 168 69.6
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 7.3e-44 181.0 171 70.8
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 7.3e-44 181.0 166 71.7
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 4.0e-42 175.3 148 73.0
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 5.2e-42 174.9 166 69.3
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 8.9e-42 174.1 154 72.1
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 1.2e-41 173.7 205 59.0
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 1.5e-41 173.3 167 68.9
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 1.5e-41 173.3 161 71.4
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 1.5e-41 173.3 198 61.1
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 4.4e-41 171.8 145 77.2
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 5.8e-41 171.4 171 70.2
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 1.3e-40 170.2 174 69.0
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 6.4e-40 167.9 162 69.1
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 6.4e-40 167.9 157 68.2
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 1.1e-39 167.2 168 69.6
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 1.4e-39 166.8 160 69.4
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 2.4e-39 166.0 160 68.1
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 3.2e-39 165.6 157 69.4
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 3.2e-39 165.6 160 67.5
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 3.2e-39 165.6 158 68.4
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 7.1e-39 164.5 156 68.6
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 7.1e-39 164.5 202 49.5
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 9.2e-39 164.1 156 67.9
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 1.6e-38 163.3 141 72.3
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 3.5e-38 162.2 160 68.8
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 4.6e-38 161.8 176 65.9
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 6.0e-38 161.4 156 67.9
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 6.0e-38 161.4 162 69.8
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 7.8e-38 161.0 156 68.6
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 7.8e-38 161.0 141 71.6
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 1.3e-37 160.2 160 68.1
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 3.0e-37 159.1 161 66.5
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 3.9e-37 158.7 143 70.6
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 3.9e-37 158.7 155 67.7
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 3.9e-37 158.7 143 70.6
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 5.1e-37 158.3 127 76.4
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 8.6e-37 157.5 160 66.9
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 2.5e-36 156.0 156 68.6
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 3.3e-36 155.6 145 69.7
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 3.3e-36 155.6 145 69.7
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 4.3e-36 155.2 163 65.6
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 2.1e-35 152.9 162 64.2
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 9.9e-33 144.1 132 65.2
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 6.4e-32 141.4 189 46.0
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 3.2e-31 139.0 153 64.7
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 5.4e-31 138.3 124 67.7
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 2.7e-30 136.0 168 54.8
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 6.0e-30 134.8 180 48.3
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 2.3e-29 132.9 151 60.9
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 3.0e-29 132.5 145 61.4
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 2.8e-27 125.9 152 50.0
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 4.8e-27 125.2 106 65.1
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 6.2e-27 124.8 104 68.3
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.8e-26 123.2 123 57.7
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 3.8e-24 115.5 136 51.5
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 3.5e-22 109.0 148 52.7
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 2.5e-20 102.8 89 66.3
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 3.1e-18 95.9 158 43.7
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 1.2e-14 84.0 106 49.1
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 3.5e-14 82.4 91 56.0
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 3.7e-11 72.4 96 42.7
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 3.1e-10 69.3 65 61.5
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 2.0e-09 66.6 69 50.7


User provided reference genes

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