Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 1.2e-152 543.1 279 100.0
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.0e-82 310.8 249 69.9
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 3.0e-82 309.3 245 69.8
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.9e-81 306.6 254 67.7
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.3e-81 305.4 263 67.7
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 4.3e-81 305.4 268 65.7
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.8e-80 302.8 256 65.6
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 2.8e-80 302.8 260 64.6
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 6.3e-80 301.6 257 65.8
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 3.1e-79 299.3 238 68.5
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 6.9e-79 298.1 256 65.2
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 9.1e-79 297.7 242 67.4
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.5e-78 297.0 258 65.1
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 7.7e-78 294.7 268 64.2
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 1.3e-77 293.9 251 65.3
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 2.9e-77 292.7 256 64.5
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.9e-77 292.7 256 63.3
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.8e-77 292.4 256 64.1
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.1e-76 290.8 234 68.4
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.1e-76 290.8 254 64.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.9e-76 290.0 263 63.9
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 3.2e-76 289.3 248 64.9
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 4.2e-76 288.9 249 63.9
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 1.6e-75 287.0 238 65.5
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.1e-75 286.6 259 65.3
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 2.1e-75 286.6 255 63.9
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.7e-75 286.2 241 66.0
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 4.6e-75 285.4 255 62.4
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.0e-74 284.3 248 64.5
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.0e-74 284.3 352 51.1
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.4e-74 283.9 258 64.0
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 1.8e-74 283.5 239 63.6
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.3e-74 283.1 256 63.3
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.5e-73 280.4 254 61.8
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 2.0e-73 280.0 280 58.6
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 7.4e-73 278.1 256 62.9
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 9.7e-73 277.7 256 62.9
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.3e-72 277.3 234 63.7
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.3e-72 277.3 262 60.3
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 3.7e-72 275.8 254 62.6
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.7e-72 275.8 254 61.0
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 3.7e-72 275.8 254 61.0
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 3.7e-72 275.8 243 62.1
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.4e-71 273.9 257 61.1
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.3e-71 271.9 269 58.7
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.9e-71 271.6 230 65.2
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 2.0e-70 270.0 265 59.2
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 3.4e-70 269.2 257 59.9
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 4.5e-70 268.9 266 60.5
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.3e-69 267.3 259 59.5
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 3.8e-69 265.8 263 59.7
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.8e-69 265.8 253 60.5
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 5.0e-69 265.4 264 59.8
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 5.0e-69 265.4 260 59.6
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 5.0e-69 265.4 252 59.5
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.4e-68 263.8 241 61.0
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 4.2e-68 262.3 240 62.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 9.4e-68 261.2 264 58.0
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.2e-67 260.8 225 65.8
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.2e-67 260.8 244 59.8
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.6e-67 260.4 231 62.8
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.7e-67 259.6 249 60.2
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 4.7e-67 258.8 250 59.2
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 7.9e-67 258.1 250 60.0
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 7.9e-67 258.1 232 61.2
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 1.0e-66 257.7 254 57.1
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.0e-66 257.7 253 58.1
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.0e-66 257.7 229 62.0
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.0e-66 257.7 254 57.1
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.4e-66 257.3 232 61.2
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.8e-66 256.9 243 59.3
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.3e-66 256.5 261 58.6
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 3.9e-66 255.8 256 58.6
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 3.9e-66 255.8 257 58.8
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 5.2e-66 255.4 244 59.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.5e-65 253.8 250 59.6
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.0e-65 253.4 256 58.6
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.0e-65 253.4 260 58.5
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.3e-64 250.8 251 57.0
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.7e-64 250.4 234 61.5
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.7e-64 250.4 259 57.5
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.7e-64 250.4 259 56.0
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 4.8e-64 248.8 263 55.9
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.1e-63 247.7 258 57.4
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.1e-63 247.7 255 57.6
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 2.4e-63 246.5 256 56.2
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 5.3e-63 245.4 255 57.3
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 2.6e-62 243.0 248 58.1
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 3.5e-62 242.7 254 55.9
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 5.9e-62 241.9 250 54.4
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 5.9e-62 241.9 169 76.3
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 7.7e-62 241.5 239 57.7
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.0e-61 241.1 258 53.9
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.0e-61 241.1 229 59.4
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.7e-61 240.4 254 55.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.7e-61 240.4 253 55.3
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 2.9e-61 239.6 270 52.2
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.1e-60 237.7 323 49.2
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.5e-60 236.5 173 73.4
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 9.4e-60 234.6 173 69.4
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 9.4e-60 234.6 237 56.5
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.6e-59 233.8 267 51.7
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.1e-59 233.4 249 57.0
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 3.6e-59 232.6 253 54.2
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 6.1e-59 231.9 237 55.3
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 5.2e-58 228.8 244 52.5
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 8.8e-58 228.0 245 53.5
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.0e-57 226.9 248 54.8
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 7.5e-57 224.9 213 59.2
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 2.2e-56 223.4 258 51.6
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.4e-55 220.7 256 51.6
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 4.1e-55 219.2 253 50.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 5.9e-54 215.3 167 70.1
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-53 214.2 170 68.8
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 2.2e-53 213.4 177 64.4
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 2.9e-53 213.0 146 76.7
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 6.5e-53 211.8 219 57.5
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 2.7e-51 206.5 258 50.0
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 6.1e-51 205.3 250 54.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 2.3e-50 203.4 213 57.7
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 3.4e-49 199.5 129 77.5
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.4e-49 199.1 265 48.7
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 2.8e-48 196.4 135 76.3
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.4e-47 194.1 175 57.1
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.4e-47 192.2 176 61.4
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 3.8e-45 186.0 233 49.4
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.8e-43 179.9 201 53.2
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.5e-41 174.1 393 34.6
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.1e-39 167.9 200 51.5
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.1e-39 167.9 200 51.5
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.1e-39 167.9 200 51.5
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.8e-39 167.2 253 42.7
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.4e-39 166.8 219 49.8
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.6e-38 164.1 162 58.6
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 8.6e-37 158.3 224 45.1
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.0e-29 134.8 291 38.5
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 7.0e-23 112.1 140 50.7
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 5.6e-20 102.4 273 34.4
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.6e-17 93.6 82 61.0
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.7e-16 89.7 117 47.9
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 6.4e-16 89.0 62 72.6
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.4e-15 87.8 157 36.9
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 4.1e-15 86.3 183 37.7
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.1e-15 86.3 57 68.4
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 7.8e-14 82.0 183 31.7
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 8.6e-13 78.6 255 32.5
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 3.3e-12 76.6 57 66.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 6.2e-11 72.4 127 41.7
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.1e-11 72.0 44 77.3
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.1e-10 71.6 197 30.5
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 3.4e-09 66.6 43 74.4
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.7e-08 64.3 121 41.3


User provided reference genes

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