Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.1e-113 413.3 199 100.0
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 6.2e-82 307.8 204 75.0
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 6.2e-82 307.8 204 75.0
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.8e-81 306.2 197 76.1
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 2.2e-79 299.3 202 73.8
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.6e-77 293.1 198 73.2
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 4.6e-77 291.6 205 68.8
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 2.3e-76 289.3 205 70.2
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 2.3e-76 289.3 205 70.2
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 3.0e-76 288.9 204 71.1
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 8.7e-76 287.3 202 69.8
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.5e-75 286.6 204 69.6
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.5e-75 285.8 201 72.6
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 2.5e-75 285.8 200 71.0
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 3.3e-75 285.4 207 69.6
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 7.4e-75 284.3 201 69.2
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 7.4e-75 284.3 203 70.0
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 9.6e-75 283.9 205 67.3
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.6e-74 283.1 201 69.2
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 2.1e-74 282.7 208 68.8
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 4.8e-74 281.6 204 68.6
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 4.8e-74 281.6 200 71.0
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 6.3e-74 281.2 204 67.6
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 8.2e-74 280.8 205 68.3
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 1.1e-73 280.4 202 68.8
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.4e-73 280.0 206 68.9
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.8e-73 279.6 206 70.9
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 3.1e-73 278.9 203 69.5
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 5.3e-73 278.1 202 67.8
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 9.0e-73 277.3 202 68.8
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.5e-72 276.6 201 68.7
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.5e-72 276.6 203 69.5
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.5e-72 276.6 197 71.1
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 2.6e-72 275.8 202 66.8
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 2.6e-72 275.8 207 67.1
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.0e-71 273.9 198 71.2
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 1.3e-71 273.5 203 67.5
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 1.1e-70 270.4 202 66.3
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.4e-70 270.0 194 69.6
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.4e-70 270.0 205 67.8
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 7.2e-70 267.7 207 65.7
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 9.3e-70 267.3 205 67.8
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 9.3e-70 267.3 219 64.4
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 1.2e-69 266.9 194 67.0
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.6e-69 266.5 202 67.8
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.6e-69 266.5 192 69.8
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 1.6e-69 266.5 207 66.2
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.1e-69 266.2 204 65.7
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 4.6e-69 265.0 197 65.5
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 7.9e-69 264.2 203 64.5
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.8e-68 263.1 206 64.1
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.3e-68 262.7 221 62.0
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.3e-68 262.7 221 60.6
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 2.3e-68 262.7 207 62.3
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 3.0e-68 262.3 195 65.1
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 3.0e-68 262.3 202 66.8
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 3.9e-68 261.9 200 66.5
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 5.1e-68 261.5 195 66.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 5.1e-68 261.5 195 65.1
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 6.7e-68 261.2 197 64.5
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 6.7e-68 261.2 197 64.5
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 6.7e-68 261.2 199 66.3
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 8.7e-68 260.8 199 66.3
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.5e-67 260.0 200 66.0
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 4.3e-67 258.5 205 66.8
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 9.7e-67 257.3 202 66.3
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.3e-66 256.9 200 66.5
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 2.2e-66 256.1 197 64.0
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 3.7e-66 255.4 199 64.3
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 6.3e-66 254.6 223 60.5
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 6.3e-66 254.6 203 62.6
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 8.2e-66 254.2 197 63.5
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.1e-65 253.8 205 65.4
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.4e-65 253.4 194 64.4
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.4e-65 253.4 193 63.7
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.8e-65 253.1 193 64.8
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.8e-65 253.1 193 63.7
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 4.1e-65 251.9 194 64.4
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 5.3e-65 251.5 194 64.9
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 9.1e-65 250.8 194 64.4
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.5e-64 250.0 190 64.2
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.6e-64 249.2 192 64.6
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 5.9e-64 248.1 193 63.7
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 5.9e-64 248.1 212 60.4
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 2.2e-63 246.1 195 62.1
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 5.0e-63 245.0 202 62.4
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.4e-62 243.4 191 64.4
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 5.5e-62 241.5 190 62.1
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 2.7e-61 239.2 190 64.2
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.8e-60 236.5 191 61.3
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.3e-60 236.1 190 62.1
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.1e-59 233.8 187 64.2
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 3.3e-59 232.3 190 64.2
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.8e-57 226.5 202 56.4
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 1.8e-57 226.5 226 56.2
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.2e-56 223.8 167 65.9
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 7.7e-56 221.1 164 70.1
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 2.5e-54 216.1 173 63.6
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 2.5e-46 189.5 171 59.1
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 9.4e-46 187.6 150 62.7
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 1.0e-44 184.1 151 64.9
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.4e-44 183.7 154 61.0
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 1.5e-43 180.3 117 72.6
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 4.4e-43 178.7 205 50.2
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 4.4e-43 178.7 202 48.0
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 2.8e-42 176.0 191 48.2
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 3.1e-41 172.6 149 59.7
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 3.1e-41 172.6 230 44.3
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.2e-38 162.5 146 56.8
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 4.2e-38 162.2 112 71.4
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.8e-36 156.8 234 38.5
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 1.8e-28 130.2 162 43.2
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.6e-24 117.1 119 52.9
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.9e-22 110.2 120 50.8
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 2.5e-22 109.8 115 51.3
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.8e-20 103.6 64 75.0
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 4.6e-16 89.0 58 75.9
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.6e-15 84.7 146 37.7
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 1.9e-14 83.6 50 72.0
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 5.4e-09 65.5 86 45.3
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.2e-08 64.3 86 37.2
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.2e-08 64.3 63 50.8
MCO15G478 Micromonas commoda HOM05D005776 ORTHO05D007333 3.0e-07 59.7 84 35.7
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 3.0e-07 59.7 96 33.3
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 4.3e-06 55.8 73 32.9


User provided reference genes

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