Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.4e-150 535.4 258 100.0
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.3e-103 380.2 246 74.8
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 3.7e-103 378.6 258 69.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.9e-103 378.3 258 71.7
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.4e-102 376.7 258 69.0
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.2e-102 375.6 258 70.5
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 7.0e-102 374.4 258 70.9
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.0e-101 372.9 259 68.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.0e-100 368.2 261 67.8
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.5e-99 366.7 257 67.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.5e-99 365.9 258 69.8
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.6e-99 364.8 259 67.6
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 4.7e-98 361.7 257 66.5
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-97 360.5 259 65.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.4e-97 360.1 258 64.7
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.4e-97 360.1 254 68.9
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.2e-97 358.2 260 67.7
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-96 355.9 259 64.5
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 7.5e-96 354.4 258 66.7
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 9.8e-96 354.0 255 67.8
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.2e-95 352.8 258 64.7
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.9e-95 352.4 258 64.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.1e-94 350.5 269 66.5
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.4e-94 350.1 254 68.1
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.4e-94 349.4 259 66.0
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.1e-94 348.6 256 65.2
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.2e-93 347.1 254 66.9
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.7e-93 345.9 259 64.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.8e-93 344.4 258 66.3
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.3e-92 343.6 253 64.8
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.3e-92 343.6 260 67.7
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.3e-92 343.6 259 66.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 3.0e-92 342.4 251 66.9
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.1e-92 341.7 259 64.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 5.1e-92 341.7 256 66.8
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 6.6e-92 341.3 253 64.4
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.5e-91 340.1 250 64.8
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.5e-91 339.3 256 65.6
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 3.3e-91 339.0 252 67.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 5.6e-91 338.2 258 65.1
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.1e-90 336.3 260 62.3
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.1e-90 336.3 258 62.4
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.8e-90 335.9 258 62.0
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.8e-90 335.9 254 65.4
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.2e-90 334.7 258 61.6
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.1e-89 332.4 260 63.1
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.9e-89 330.9 254 63.4
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.5e-88 330.1 260 63.5
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.0e-88 329.7 263 62.4
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.4e-88 328.6 261 62.5
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 5.8e-88 328.2 255 62.4
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.3e-87 327.0 247 62.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.2e-87 326.2 260 64.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 4.9e-87 325.1 257 63.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-86 323.6 264 60.6
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.9e-86 323.2 261 57.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.9e-86 323.2 257 61.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.1e-86 322.0 244 62.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 4.1e-86 322.0 260 63.5
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 4.1e-86 322.0 261 59.0
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 9.2e-86 320.9 244 62.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 9.2e-86 320.9 260 60.0
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.2e-85 320.5 260 63.5
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.2e-85 320.5 260 63.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.1e-85 319.7 257 63.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.7e-85 319.3 253 59.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.0e-84 317.4 253 61.7
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.0e-84 317.4 253 61.7
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.7e-84 316.6 244 63.5
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-84 316.6 263 62.4
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.3e-84 316.2 253 63.6
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.9e-84 315.5 253 63.2
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 6.6e-84 314.7 293 53.9
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-83 313.2 259 61.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.9e-83 313.2 250 62.4
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.5e-83 312.8 265 58.5
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.5e-83 312.8 266 60.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.5e-83 312.8 264 61.4
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 4.3e-83 312.0 257 61.1
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.6e-83 311.6 263 62.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 9.6e-83 310.8 245 62.9
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 9.6e-83 310.8 245 62.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.2e-82 310.5 264 58.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 4.7e-82 308.5 261 58.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 6.2e-82 308.1 181 77.9
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.1e-82 307.8 253 60.5
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.1e-82 307.8 253 60.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 8.1e-82 307.8 175 79.4
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 3.1e-81 305.8 225 65.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 4.0e-81 305.4 262 59.9
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.0e-81 305.4 218 66.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 6.8e-81 304.7 255 59.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 8.9e-81 304.3 256 59.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 4.4e-80 302.0 260 55.8
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.4e-80 302.0 264 57.2
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 9.9e-80 300.8 262 57.3
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 9.9e-80 300.8 249 61.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.3e-79 300.4 262 56.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.9e-78 296.6 259 55.6
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 7.1e-78 294.7 261 55.9
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.1e-77 293.1 258 56.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.7e-77 292.7 259 54.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.5e-77 292.4 263 54.4
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 4.6e-77 292.0 267 55.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.3e-76 289.7 175 76.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.9e-75 286.6 261 53.3
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.3e-75 285.8 219 62.1
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 3.3e-75 285.8 261 53.6
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 9.6e-75 284.3 259 52.9
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 9.6e-75 284.3 260 57.3
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.8e-74 282.7 262 53.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.6e-74 282.3 258 54.7
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 6.2e-74 281.6 250 54.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-73 280.4 259 52.9
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.8e-73 280.0 258 53.9
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 6.9e-73 278.1 254 53.9
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 5.8e-72 275.0 177 70.6
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 7.6e-72 274.6 234 60.3
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 8.4e-71 271.2 260 51.9
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.4e-70 270.4 259 55.2
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 4.2e-70 268.9 185 64.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.6e-69 266.9 220 57.3
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.1e-69 266.5 218 60.1
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 6.0e-69 265.0 218 61.0
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.7e-68 263.5 255 53.7
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.1e-67 260.8 219 59.8
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 3.3e-67 259.2 258 52.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 5.6e-67 258.5 146 82.2
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.8e-66 256.1 150 79.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 7.6e-64 248.1 137 83.2
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-61 240.4 256 50.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.1e-61 240.0 218 54.6
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.7e-61 239.6 266 48.9
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.1e-59 234.2 166 63.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 3.7e-58 229.2 182 58.2
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.2e-56 224.2 254 48.8
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.6e-56 221.5 147 69.4
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-55 220.7 152 69.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.1e-54 217.6 177 57.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.9e-54 216.9 166 57.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 3.5e-53 212.6 164 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.3e-52 210.7 171 55.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.3e-51 206.1 169 55.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.9e-47 193.0 116 75.9
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 8.8e-36 154.8 89 78.7
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.5e-35 154.1 110 65.5
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 9.1e-33 144.8 138 55.8
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-30 137.5 115 59.1
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-30 136.7 215 40.5
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-29 133.7 84 73.8
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.2e-26 123.6 82 65.9
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.2e-24 117.9 213 31.0
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 5.0e-23 112.5 141 39.7
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.0e-23 112.5 78 67.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.5e-22 110.9 102 53.9
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.5e-22 109.0 73 67.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 9.4e-22 108.2 63 79.4
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.0e-19 100.5 65 69.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-16 90.5 67 61.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-13 79.7 86 46.5
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.0e-13 78.6 52 65.4
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 5.2e-12 75.9 46 71.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.6e-11 73.6 39 82.1
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.5e-11 72.0 52 61.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-10 70.9 51 62.7
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 7.7e-08 62.0 36 69.4
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-07 60.8 43 62.8
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 5.5e-06 55.8 34 67.6


User provided reference genes

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