Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 4.2e-172 607.8 288 100.0
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 2.0e-150 535.8 287 85.4
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 2.7e-150 535.4 288 85.8
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 6.6e-149 530.8 288 83.3
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 3.3e-148 528.5 288 84.7
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 2.8e-147 525.4 286 84.3
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 6.1e-147 524.2 289 84.4
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 1.8e-146 522.7 286 83.6
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 1.2e-145 520.0 288 81.9
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 2.0e-145 519.2 288 81.6
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 4.4e-145 518.1 287 81.2
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 4.4e-145 518.1 288 83.0
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 2.9e-144 515.4 288 81.2
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 3.7e-144 515.0 288 80.9
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 4.9e-144 514.6 286 80.8
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 6.4e-144 514.2 289 82.0
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 2.0e-142 509.2 288 82.3
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 5.0e-141 504.6 288 80.9
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 3.3e-140 501.9 288 79.2
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 4.3e-140 501.5 290 79.7
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 9.5e-140 500.4 288 80.2
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 1.6e-139 499.6 286 79.0
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.8e-138 496.1 288 78.8
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 2.3e-138 495.7 319 72.4
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 2.0e-137 492.7 287 79.1
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 1.9e-135 486.1 288 78.8
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 7.0e-135 484.2 252 87.3
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 2.5e-132 475.7 245 89.8
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 5.6e-132 474.6 286 76.2
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 1.2e-131 473.4 286 74.5
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 8.1e-131 470.7 286 74.5
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 1.1e-130 470.3 286 74.1
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 1.1e-130 470.3 286 74.1
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 1.4e-130 469.9 286 73.8
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 8.9e-130 467.2 286 73.4
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 5.8e-129 464.5 319 69.9
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 2.2e-128 462.6 237 89.0
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 2.9e-128 462.2 236 89.8
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 6.4e-128 461.1 236 89.8
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 8.3e-128 460.7 237 88.2
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 1.6e-126 456.4 245 84.1
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 1.3e-125 453.4 244 84.0
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 3.9e-125 451.8 285 73.0
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 5.1e-125 451.4 237 87.8
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 8.6e-125 450.7 237 86.1
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.5e-124 449.9 235 87.7
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 4.3e-124 448.4 236 86.0
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 4.3e-124 448.4 236 87.3
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 9.5e-124 447.2 236 84.7
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 9.5e-124 447.2 236 84.3
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 1.6e-123 446.4 238 84.9
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 2.8e-123 445.7 286 71.0
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 2.8e-123 445.7 236 84.3
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 3.6e-123 445.3 236 86.0
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 3.6e-123 445.3 236 85.2
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 4.7e-123 444.9 235 84.7
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 4.7e-123 444.9 238 84.9
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 6.2e-123 444.5 288 71.5
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 6.2e-123 444.5 236 84.7
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 8.1e-123 444.1 237 84.4
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 1.8e-122 443.0 236 84.3
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 1.8e-122 443.0 288 69.8
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 3.1e-122 442.2 236 84.7
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 5.2e-122 441.4 236 83.9
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 6.8e-122 441.0 238 83.6
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 6.8e-122 441.0 236 83.1
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 8.9e-122 440.7 236 84.7
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 1.2e-121 440.3 236 84.3
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 1.5e-121 439.9 236 84.3
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 2.6e-121 439.1 236 83.5
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 4.4e-121 438.3 228 87.3
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 5.8e-121 438.0 238 81.9
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 7.6e-121 437.6 252 79.8
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 9.9e-121 437.2 288 70.5
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 3.7e-120 435.3 236 86.4
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 4.9e-120 434.9 253 76.3
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.9e-119 433.0 258 74.8
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 5.4e-119 431.4 239 79.9
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 2.1e-118 429.5 236 81.4
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 6.0e-118 427.9 236 80.5
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 7.8e-118 427.6 239 79.1
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 7.8e-118 427.6 236 82.2
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 1.3e-117 426.8 236 83.5
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 3.9e-117 425.2 290 69.3
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 7.3e-116 421.0 236 80.1
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 1.2e-115 420.2 286 66.1
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 6.4e-112 407.9 236 77.1
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 8.4e-112 407.5 236 76.7
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.4e-111 406.8 236 76.7
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.6e-110 403.3 236 75.8
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 2.7e-110 402.5 241 76.3
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 6.0e-110 401.4 222 83.3
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 5.1e-109 398.3 231 75.8
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 1.6e-107 393.3 238 73.5
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 4.8e-107 391.7 235 74.0
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 8.4e-104 380.9 233 74.7
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 4.0e-98 362.1 208 80.8
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 2.0e-97 359.8 237 70.9
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 6.4e-96 354.8 220 72.7
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 3.9e-93 345.5 235 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 5.6e-92 341.7 237 65.0
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 3.2e-87 325.9 183 81.4
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.3e-83 313.9 187 81.8
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 1.4e-82 310.5 172 82.0
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 7.6e-81 304.7 338 44.1
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 1.1e-76 290.8 188 71.3
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 5.0e-72 275.4 162 77.8
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 2.0e-65 253.4 156 73.7
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 5.5e-63 245.4 263 43.0
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 7.2e-63 245.0 138 82.6
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 2.7e-62 243.0 158 66.5
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 6.1e-62 241.9 191 62.3
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 7.7e-57 224.9 189 55.6
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 5.5e-55 218.8 126 80.2
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.4e-50 203.4 124 72.6
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 5.7e-44 182.2 94 88.3
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-21 106.7 115 48.7
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 2.0e-20 104.0 87 66.7
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 1.3e-16 91.3 85 49.4
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.2e-11 73.9 67 55.2
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 3.9e-08 63.2 103 38.8
Prupe.6G259700 Prunus persica HOM05D037056 ORTHO05D335045 1.6e-06 57.8 37 70.3
Prupe.1G327800 Prunus persica HOM05D037056 ORTHO05D335556 3.6e-06 56.6 37 70.3
Prupe.8G103600 Prunus persica HOM05D037056 ORTHO05D336041 3.6e-06 56.6 37 70.3


User provided reference genes

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