Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A761T86 Lonicera japonica HOM05D004532 ORTHO05D000028 1.2e-136 490.0 264 100.0
Dinv35909 Davidia involucrata HOM05D001837 ORTHO05D000028 4.1e-65 252.3 278 55.8
Migut.C00517 Erythranthe guttata HOM05D000042 ORTHO05D000028 9.2e-65 251.1 267 51.7
Actinidia38089 Actinidia chinensis HOM05D000042 ORTHO05D000028 1.0e-63 247.7 276 52.2
MSTRG.1048 Avicennia marina HOM05D000042 ORTHO05D000028 3.6e-61 239.2 276 48.2
GSVIVG01009393001 Vitis vinifera HOM05D001837 ORTHO05D000028 2.3e-60 236.5 276 51.1
Duzib116G0629 Durio zibethinus HOM05D004532 ORTHO05D000028 8.9e-60 234.6 276 48.2
Thecc.08G094200 Theobroma cacao HOM05D004532 ORTHO05D000028 1.5e-59 233.8 252 50.8
Oeu061838.1 Olea europaea HOM05D000042 ORTHO05D000028 4.9e-58 228.8 280 48.2
Peaxi162Scf00848g00319 Petunia axillaris HOM05D004532 ORTHO05D000028 3.9e-55 219.2 286 47.6
Ciclev10001730m.g Citrus clementina HOM05D001837 ORTHO05D000028 6.6e-55 218.4 277 46.9
CAN.G1054.7 Capsicum annuum HOM05D000042 ORTHO05D000028 4.7e-53 212.2 285 47.0
Manes.18G043300 Manihot esculenta HOM05D000042 ORTHO05D000028 4.7e-53 212.2 270 47.0
Oeu040891.2 Olea europaea HOM05D000042 ORTHO05D000028 1.1e-52 211.1 268 47.4
Sopen04g031890 Solanum pennellii HOM05D000042 ORTHO05D000028 1.1e-52 211.1 283 47.3
Hma1.2p1_0923F.1_g237150 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 1.8e-52 210.3 274 46.7
Solyc04g078300.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 2.0e-51 206.8 283 46.3
HanXRQChr05g0150571 Helianthus annuus HOM05D001837 ORTHO05D000028 9.9e-51 204.5 279 45.9
ECA246G0663 Erigeron canadensis HOM05D000086 ORTHO05D002912 2.4e-49 199.9 268 46.3
COL.COLO4_28564 Corchorus olitorius HOM05D000021 ORTHO05D000028 1.3e-47 194.1 250 48.8
Nitab4.5_0000934g0190 Nicotiana tabacum HOM05D000042 ORTHO05D000028 2.3e-47 193.4 266 46.2
HanXRQChr15g0483111 Helianthus annuus HOM05D001837 ORTHO05D000028 2.5e-46 189.9 271 43.9
Haze_18093 Corylus avellana HOM05D004532 ORTHO05D000028 3.6e-45 186.0 225 47.6
Cfa018031 Carpinus fangiana HOM05D004532 ORTHO05D000028 4.0e-44 182.6 228 49.1
Lsat_1_v5_gn_6_109820 Lactuca sativa HOM05D001837 ORTHO05D000028 1.7e-42 177.2 278 41.7
Nitab4.5_0007275g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 3.8e-42 176.0 266 44.4
TAR625G1000 Trochodendron aralioides HOM05D001837 ORTHO05D000028 1.1e-41 174.5 275 41.1
CiPaw.15G048700 Carya illinoinensis HOM05D000042 ORTHO05D000028 2.4e-41 173.3 267 42.3
Cc10_g05320 Coffea canephora HOM05D001837 ORTHO05D000028 4.6e-40 169.1 261 44.4
Gorai.009G216900 Gossypium raimondii HOM05D000042 ORTHO05D000028 6.6e-39 165.2 256 43.8
SGA_v2.0_scaffold26G11297 Striga asiatica HOM05D000042 ORTHO05D000028 6.2e-37 158.7 243 41.6
Gohir.D02G089900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 8.1e-37 158.3 280 39.3
Prupe.1G427500 Prunus persica HOM05D000042 ORTHO05D000028 1.4e-36 157.5 271 41.0
Gorai.005G100600 Gossypium raimondii HOM05D000042 ORTHO05D000028 2.4e-36 156.8 279 38.7
Gohir.A05G207000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.1e-33 147.9 255 41.6
Glyma.04G043800 Glycine max HOM05D000042 ORTHO05D000028 3.5e-32 142.9 269 38.7
Lj1g0023377 Lotus japonicus HOM05D000042 ORTHO05D000028 3.5e-32 142.9 275 34.5
Medtr3g102570 Medicago truncatula HOM05D001837 ORTHO05D000028 7.4e-30 135.2 276 33.3
TWI56G1245 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 6.2e-29 132.1 171 49.1
Ca_15922_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 3.1e-28 129.8 242 37.6
Potri.014G021000 Populus trichocarpa HOM05D004532 ORTHO05D000028 9.0e-28 128.3 202 41.6
TPR.G25555 Trifolium pratense HOM05D000042 ORTHO05D000028 2.2e-26 123.6 243 36.2
DCAR_008840 Daucus carota HOM05D042413 ORTHO05D000028 2.9e-26 123.2 228 37.3
CSS0046201 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.1e-25 121.3 257 37.7
Cpa.g.sc21.134 Carica papaya HOM05D004532 ORTHO05D000028 1.2e-24 117.9 102 60.8
CSS0035363 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.5e-24 116.3 241 36.9
Psat5g040360 Pisum sativum HOM05D000042 ORTHO05D000028 2.5e-22 110.2 268 32.1
PGR083G1161 Punica granatum HOM05D001837 ORTHO05D000028 3.3e-22 109.8 176 42.0
Gohir.D05G210450 Gossypium hirsutum HOM05D004532 ORTHO05D000028 5.6e-22 109.0 191 40.8
Actinidia08265 Actinidia chinensis HOM05D001837 ORTHO05D000028 1.1e-20 104.8 272 33.5
CANSAT25G2386 Cannabis sativa HOM05D000042 ORTHO05D000028 2.6e-19 100.1 175 38.3
Phvul.009G069300 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 4.5e-19 99.4 202 34.2
PGSC0003DMG400021518 Solanum tuberosum HOM05D004532 ORTHO05D000028 1.1e-17 94.7 150 41.3
arahy.Tifrunner.gnm1.ann1.TIWB5X Arachis hypogaea HOM05D000042 ORTHO05D000028 1.9e-17 94.0 206 34.0
QL02p002913 Quercus lobata HOM05D004532 ORTHO05D000028 5.5e-17 92.4 110 46.4
arahy.Tifrunner.gnm1.ann1.JU2Z2L Arachis hypogaea HOM05D004532 ORTHO05D000028 2.7e-16 90.1 95 51.6
FAN27G2022 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.0e-15 88.2 162 37.7
Nn5g30466 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.3e-15 87.8 197 36.5
Aqoxy6G00549 Aquilegia oxysepala HOM05D004532 ORTHO05D000028 3.0e-15 86.7 185 33.5
RcHm_v2.0_Chr6g0295381 Rosa chinensis HOM05D068235 ORTHO05D046661 8.7e-15 85.1 209 32.1
arahy.Tifrunner.gnm1.ann1.K7VJRA Arachis hypogaea HOM05D000042 ORTHO05D000028 5.7e-14 82.4 75 54.7
DCAR_012804 Daucus carota HOM05D000889 ORTHO05D000693 6.3e-13 79.0 269 30.1
Nn1g08850 Nelumbo nucifera HOM05D004532 ORTHO05D000028 1.5e-11 74.3 186 30.1
PSO675G3764 Papaver somniferum HOM05D000042 ORTHO05D000028 4.5e-11 72.8 145 36.6
MBI05_g00776_MAGBIO Magnolia biondii HOM05D004532 ORTHO05D000028 2.9e-10 70.1 168 28.6
TAR376G0693 Trochodendron aralioides HOM05D004532 ORTHO05D000028 2.9e-10 70.1 192 29.2
Rhsim07G0222700 Rhododendron simsii HOM05D004532 ORTHO05D000028 3.8e-10 69.7 71 54.9
PSO541G4552 Papaver somniferum HOM05D004532 ORTHO05D000028 4.2e-09 66.2 65 46.2
Manes.13G090200 Manihot esculenta HOM05D004532 ORTHO05D000028 5.5e-09 65.9 151 30.5
HPP92_019236 Vanilla planifolia HOM05D004532 ORTHO05D000028 2.7e-08 63.5 128 32.8
Thecc.01G107200 Theobroma cacao HOM05D004532 ORTHO05D000028 4.6e-08 62.8 206 25.7
Os08g0494100 Oryza sativa ssp. japonica HOM05D004532 ORTHO05D000028 6.1e-08 62.4 170 32.4
Duzib147G1249 Durio zibethinus HOM05D000042 ORTHO05D000028 1.0e-07 61.6 197 28.4
arahy.Tifrunner.gnm1.ann1.L0LNYC Arachis hypogaea HOM05D000042 ORTHO05D000028 1.8e-07 60.8 193 26.4
Gorai.005G093000 Gossypium raimondii HOM05D004532 ORTHO05D000028 3.0e-07 60.1 169 29.6
QL06p050456 Quercus lobata HOM05D004532 ORTHO05D000028 3.9e-07 59.7 182 29.1
FAN13G0077 Fragaria x ananassa HOM05D004532 ORTHO05D000028 5.1e-07 59.3 135 33.3
Gohir.D02G082700 Gossypium hirsutum HOM05D004532 ORTHO05D000028 5.1e-07 59.3 188 27.7
FAN04G1122 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.7e-07 58.9 135 32.6
Gohir.A02G075600 Gossypium hirsutum HOM05D004532 ORTHO05D000028 6.7e-07 58.9 188 27.7
SEGI_40170 Sequoiadendron giganteum HOM05D000042 ORTHO05D000028 8.7e-07 58.5 119 31.1
FvH4_5g38110 Fragaria vesca HOM05D004532 ORTHO05D000028 1.9e-06 57.4 134 31.3
Hma1.2p1_2300F.1_g319215 Hydrangea macrophylla HOM05D004532 ORTHO05D000028 1.9e-06 57.4 38 73.7
FAN18G3338 Fragaria x ananassa HOM05D004532 ORTHO05D000028 2.5e-06 57.0 135 31.9
arahy.Tifrunner.gnm1.ann1.XXIH72 Arachis hypogaea HOM05D004532 ORTHO05D000028 5.7e-06 55.8 183 27.9
Ciclev10003964m.g Citrus clementina HOM05D004532 ORTHO05D000028 5.7e-06 55.8 176 29.5
Dinv21942 Davidia involucrata HOM05D004532 ORTHO05D000028 5.7e-06 55.8 192 27.1
Manes.02G156400 Manihot esculenta HOM05D004532 ORTHO05D000028 5.7e-06 55.8 187 27.3
Duzib264G0945 Durio zibethinus HOM05D004532 ORTHO05D000028 7.4e-06 55.5 197 24.4
Sed0009551 Sechium edule HOM05D004532 ORTHO05D000028 7.4e-06 55.5 148 28.4
CsaV3_4G030750 Cucumis sativus L. HOM05D004532 ORTHO05D000028 9.7e-06 55.1 193 25.4


User provided reference genes

Program Settings