Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A750T31 Lonicera japonica HOM05D000321 ORTHO05D000204 1.2e-57 226.9 175 100.0
vmacro21404 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 6.4e-14 81.6 79 50.6
Duzib041G0248 Durio zibethinus HOM05D000321 ORTHO05D000204 1.9e-13 80.1 89 48.3
Rhsim06G0065700 Rhododendron simsii HOM05D000321 ORTHO05D000204 9.2e-13 77.8 79 49.4
QL09p016199 Quercus lobata HOM05D000321 ORTHO05D000204 1.2e-12 77.4 76 48.7
Thecc.08G082800 Theobroma cacao HOM05D000321 ORTHO05D000204 1.2e-12 77.4 76 48.7
vmacro14803 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 1.6e-12 77.0 91 44.0
Migut.H01056 Erythranthe guttata HOM05D000321 ORTHO05D000204 6.0e-12 75.1 51 60.8
MSTRG.922 Avicennia marina HOM05D000321 ORTHO05D000204 1.7e-11 73.6 47 66.0
CAN.G975.6 Capsicum annuum HOM05D000321 ORTHO05D000204 2.3e-11 73.2 86 47.7
Potri.002G113800 Populus trichocarpa HOM05D000321 ORTHO05D000204 2.3e-11 73.2 50 64.0
COL.COLO4_28430 Corchorus olitorius HOM05D000321 ORTHO05D000204 3.0e-11 72.8 82 46.3
TAR376G1078 Trochodendron aralioides HOM05D000321 ORTHO05D000204 3.0e-11 72.8 81 45.7
Duzib093G2047 Durio zibethinus HOM05D000321 ORTHO05D000204 3.9e-11 72.4 90 45.6
Lj4A77G53 Lonicera japonica HOM05D000321 ORTHO05D000204 3.9e-11 72.4 86 46.5
Peaxi162Scf00160g00717 Petunia axillaris HOM05D000321 ORTHO05D000204 3.9e-11 72.4 84 47.6
Sabra02G0090200 Salix brachista HOM05D000321 ORTHO05D000204 3.9e-11 72.4 75 50.7
Migut.C00439 Erythranthe guttata HOM05D000321 ORTHO05D000204 5.1e-11 72.0 73 49.3
Oeu022015.3 Olea europaea HOM05D000321 ORTHO05D000204 5.1e-11 72.0 89 43.8
Actinidia10234 Actinidia chinensis HOM05D000321 ORTHO05D000204 6.6e-11 71.6 57 52.6
Hma1.2p1_4204F.1_g338440 Hydrangea macrophylla HOM05D000321 ORTHO05D000204 6.6e-11 71.6 82 46.3
RcHm_v2.0_Chr6g0310211 Rosa chinensis HOM05D000321 ORTHO05D000204 6.6e-11 71.6 75 46.7
Actinidia19285 Actinidia chinensis HOM05D000321 ORTHO05D000204 8.6e-11 71.2 57 52.6
CiPaw.08G053300 Carya illinoinensis HOM05D000321 ORTHO05D000204 8.6e-11 71.2 77 46.8
Manes.18G051100 Manihot esculenta HOM05D000321 ORTHO05D000204 8.6e-11 71.2 76 46.1
Aa31LG1G4800 Aethionema arabicum HOM05D000321 ORTHO05D000204 1.1e-10 70.9 45 68.9
Sed0010930 Sechium edule HOM05D000321 ORTHO05D000204 1.1e-10 70.9 79 45.6
TAR628G1135 Trochodendron aralioides HOM05D000321 ORTHO05D000204 1.1e-10 70.9 86 45.3
DCAR_012828 Daucus carota HOM05D000321 ORTHO05D000204 1.5e-10 70.5 52 57.7
FAN20G2213 Fragaria x ananassa HOM05D000321 ORTHO05D000204 1.5e-10 70.5 76 44.7
Nitab4.5_0005116g0010 Nicotiana tabacum HOM05D000321 ORTHO05D000204 1.5e-10 70.5 78 47.4
Eucgr.F02209 Eucalyptus grandis HOM05D000321 ORTHO05D000204 2.5e-10 69.7 75 50.7
FvH4_2g32460 Fragaria vesca HOM05D000321 ORTHO05D000204 2.5e-10 69.7 75 45.3
FAN15G0672 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.5e-10 69.7 75 45.3
FAN24G2330 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.5e-10 69.7 75 45.3
Gohir.A01G124400 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.5e-10 69.7 70 51.4
Gohir.D01G112100 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.5e-10 69.7 70 51.4
Oeu008417.1 Olea europaea HOM05D000321 ORTHO05D000204 2.5e-10 69.7 85 43.5
Cfa013723 Carpinus fangiana HOM05D000418 ORTHO05D000204 3.3e-10 69.3 78 46.2
Oeu008418.2 Olea europaea HOM05D000321 ORTHO05D000204 3.3e-10 69.3 82 43.9
Os12g0633600 Oryza sativa ssp. japonica HOM05D000321 ORTHO05D000204 4.3e-10 68.9 49 61.2
Sed0013665 Sechium edule HOM05D000321 ORTHO05D000204 4.3e-10 68.9 93 39.8
Solyc04g077400.4 Solanum lycopersicum HOM05D000321 ORTHO05D000204 5.6e-10 68.6 70 48.6
VMungo1309G1982 Vigna mungo HOM05D000321 ORTHO05D000204 5.6e-10 68.6 75 45.3
ATR0807G140 Amborella trichopoda HOM05D000321 ORTHO05D000204 7.3e-10 68.2 63 55.6
Haze_22367 Corylus avellana HOM05D000321 ORTHO05D000204 7.3e-10 68.2 77 46.8
Gorai.002G137000 Gossypium raimondii HOM05D000321 ORTHO05D000204 7.3e-10 68.2 82 41.5
Nitab4.5_0007170g0040 Nicotiana tabacum HOM05D000321 ORTHO05D000204 7.3e-10 68.2 64 50.0
CANSAT25G1746 Cannabis sativa HOM05D000321 ORTHO05D000204 9.6e-10 67.8 81 44.4
CANSAT54G2242 Cannabis sativa HOM05D000321 ORTHO05D000204 9.6e-10 67.8 84 42.9
Dinv44922 Davidia involucrata HOM05D000321 ORTHO05D000204 9.6e-10 67.8 67 47.8
Nitab4.5_0001494g0130 Nicotiana tabacum HOM05D000321 ORTHO05D000204 9.6e-10 67.8 64 50.0
Cpa.g.sc160.25 Carica papaya HOM05D000321 ORTHO05D000204 1.2e-09 67.4 78 48.7
SalBow7G0185 Salvia bowleyana HOM05D000321 ORTHO05D000204 1.2e-09 67.4 49 55.1
AL2G17680 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 1.6e-09 67.0 85 44.7
Lj1g0018334 Lotus japonicus HOM05D000321 ORTHO05D000204 1.6e-09 67.0 51 56.9
Sopen04g030990 Solanum pennellii HOM05D000321 ORTHO05D000204 1.6e-09 67.0 77 46.8
PGSC0003DMG400004926 Solanum tuberosum HOM05D000321 ORTHO05D000204 1.6e-09 67.0 77 46.8
TWI36G0755 Tripterygium wilfordii HOM05D000321 ORTHO05D000204 1.6e-09 67.0 78 47.4
CiPaw.07G170600 Carya illinoinensis HOM05D000321 ORTHO05D000204 2.1e-09 66.6 50 58.0
ClCG08G016780 Citrullus lanatus HOM05D000321 ORTHO05D000204 2.1e-09 66.6 80 42.5
Ciclev10000536m.g Citrus clementina HOM05D000321 ORTHO05D000204 2.1e-09 66.6 68 48.5
Duzib116G0656 Durio zibethinus HOM05D000321 ORTHO05D000204 2.1e-09 66.6 80 46.2
FAN27G3522 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.1e-09 66.6 76 43.4
Manes.05G184400 Manihot esculenta HOM05D000321 ORTHO05D000204 2.1e-09 66.6 64 48.4
Nn1g08994 Nelumbo nucifera HOM05D000321 ORTHO05D000204 2.1e-09 66.6 76 47.4
Peaxi162Scf00381g00220 Petunia axillaris HOM05D000321 ORTHO05D000204 2.1e-09 66.6 78 44.9
GSVIVG01009282001 Vitis vinifera HOM05D000321 ORTHO05D000204 2.1e-09 66.6 86 45.3
AT1G58520 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 2.8e-09 66.2 85 44.7
CSS0029015 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 2.8e-09 66.2 84 44.0
PGR031G1827 Punica granatum HOM05D000321 ORTHO05D000204 2.8e-09 66.2 46 63.0
Zm00001eb134200 Zea mays HOM05D000321 ORTHO05D000204 2.8e-09 66.2 48 60.4
Aa31LG2G10690 Aethionema arabicum HOM05D000321 ORTHO05D000204 4.7e-09 65.5 44 65.9
CARHR283920 Cardamine hirsuta HOM05D000321 ORTHO05D000204 4.7e-09 65.5 75 44.0
Cc10_g07790 Coffea canephora HOM05D000321 ORTHO05D000204 4.7e-09 65.5 48 58.3
MELO3C010778.2 Cucumis melo HOM05D000321 ORTHO05D000204 4.7e-09 65.5 77 42.9
Thhalv10006880m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 4.7e-09 65.5 65 50.8
Phvul.009G074900 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 4.7e-09 65.5 78 39.7
HPP92_017695 Vanilla planifolia HOM05D000321 ORTHO05D000204 4.7e-09 65.5 76 48.7
Aqoxy6G02942 Aquilegia oxysepala HOM05D000321 ORTHO05D000204 6.2e-09 65.1 92 39.1
PGSC0003DMG400011555 Solanum tuberosum HOM05D000321 ORTHO05D000204 6.2e-09 65.1 89 42.7
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 8.1e-09 64.7 45 62.2
CsaV3_2G025840 Cucumis sativus L. HOM05D000321 ORTHO05D000204 8.1e-09 64.7 79 43.0
MD15G1063500 Malus domestica HOM05D000321 ORTHO05D000204 8.1e-09 64.7 85 40.0
Carub.0001s0951 Capsella rubella HOM05D000321 ORTHO05D000204 1.1e-08 64.3 47 61.7
Thhalv10023298m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 1.1e-08 64.3 85 42.4
Solyc12g088230.3 Solanum lycopersicum HOM05D000321 ORTHO05D000204 1.1e-08 64.3 89 42.7
Sopen12g030230 Solanum pennellii HOM05D000321 ORTHO05D000204 1.1e-08 64.3 89 42.7
TWI56G1058 Tripterygium wilfordii HOM05D000321 ORTHO05D000204 1.1e-08 64.3 78 48.7
unitig_0.g2301 Utricularia gibba HOM05D000321 ORTHO05D000204 1.1e-08 64.3 48 54.2
Nn5g30681 Nelumbo nucifera HOM05D000321 ORTHO05D000204 1.4e-08 63.9 77 45.5
Prupe.1G417700 Prunus persica HOM05D000321 ORTHO05D000204 1.4e-08 63.9 86 41.9
Atru.chr13.886 Acer truncatum HOM05D000321 ORTHO05D000204 1.8e-08 63.5 71 40.8
CSS0024791 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 1.8e-08 63.5 80 42.5
PSO170G3034 Papaver somniferum HOM05D000321 ORTHO05D000204 1.8e-08 63.5 52 55.8
Sp2g05100 Schrenkiella parvula HOM05D000321 ORTHO05D000204 1.8e-08 63.5 85 41.2
Ciclev10000392m.g Citrus clementina HOM05D000321 ORTHO05D000204 2.4e-08 63.2 70 42.9
PSO017G0611 Papaver somniferum HOM05D000321 ORTHO05D000204 2.4e-08 63.2 52 53.8
SGA_v2.0_scaffold238G43873 Striga asiatica HOM05D000321 ORTHO05D000204 2.4e-08 63.2 58 50.0
A01p28640 Brassica napus HOM05D000321 ORTHO05D000204 3.1e-08 62.8 75 42.7
A03p66570 Brassica napus HOM05D000321 ORTHO05D000204 3.1e-08 62.8 75 42.7
BraA01t03040Z Brassica rapa HOM05D000321 ORTHO05D000204 3.1e-08 62.8 75 42.7
BraA03t15711Z Brassica rapa HOM05D000321 ORTHO05D000204 3.1e-08 62.8 75 42.7
DCAR_020044 Daucus carota HOM05D000321 ORTHO05D000204 3.1e-08 62.8 103 35.0
Glyma.04G048800 Glycine max HOM05D000321 ORTHO05D000204 3.1e-08 62.8 75 40.0
Ah.05g166950 Amaranthus hybridus HOM05D000321 ORTHO05D000204 4.0e-08 62.4 45 53.3
BcaC07g38559 Brassica carinata HOM05D000321 ORTHO05D000204 4.0e-08 62.4 44 61.4
BcaC09g49474 Brassica carinata HOM05D000321 ORTHO05D000204 4.0e-08 62.4 74 40.5
A08p34190 Brassica napus HOM05D000321 ORTHO05D000204 4.0e-08 62.4 44 61.4
C08p13400 Brassica napus HOM05D000321 ORTHO05D000204 4.0e-08 62.4 44 61.4
BolC8t48970H Brassica oleracea HOM05D000321 ORTHO05D000204 4.0e-08 62.4 44 61.4
BraA08t35331Z Brassica rapa HOM05D000321 ORTHO05D000204 4.0e-08 62.4 44 61.4
CSS0046929 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 4.0e-08 62.4 83 42.2
HPP92_006032 Vanilla planifolia HOM05D000321 ORTHO05D000204 4.0e-08 62.4 44 63.6
Carub.0002s0601 Capsella rubella HOM05D000321 ORTHO05D000204 5.2e-08 62.0 85 42.4
AL1G20780 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 6.8e-08 61.6 78 41.0
BcaC06g31786 Brassica carinata HOM05D000321 ORTHO05D000204 6.8e-08 61.6 75 42.7
CAN.G416.8 Capsicum annuum HOM05D000418 ORTHO05D000204 6.8e-08 61.6 75 44.0
Gohir.D06G024200 Gossypium hirsutum HOM05D000321 ORTHO05D000204 6.8e-08 61.6 72 43.1
Gorai.010G028700 Gossypium raimondii HOM05D000321 ORTHO05D000204 6.8e-08 61.6 72 43.1
AT1G10090 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 8.9e-08 61.2 78 39.7
Medtr3g103560 Medicago truncatula HOM05D000321 ORTHO05D000204 8.9e-08 61.2 48 54.2
Sc02g0008220 Simmondsia chinensis HOM05D000321 ORTHO05D000204 1.2e-07 60.8 44 54.5
BcaC02g10638 Brassica carinata HOM05D000321 ORTHO05D000204 1.5e-07 60.5 75 41.3
C01p36290 Brassica napus HOM05D000321 ORTHO05D000204 1.5e-07 60.5 74 40.5
C04p26050 Brassica napus HOM05D000321 ORTHO05D000204 1.5e-07 60.5 75 41.3
BolC1t03586H Brassica oleracea HOM05D000321 ORTHO05D000204 1.5e-07 60.5 74 40.5
BolC4t24198H Brassica oleracea HOM05D000321 ORTHO05D000204 1.5e-07 60.5 75 41.3
Gohir.A06G026932 Gossypium hirsutum HOM05D000321 ORTHO05D000204 1.5e-07 60.5 72 43.1
Ca_06991_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 2.0e-07 60.1 65 43.1
Lalb_Chr08g0245141 Lupinus albus HOM05D000321 ORTHO05D000204 2.0e-07 60.1 78 41.0
MD08G1076400 Malus domestica HOM05D000321 ORTHO05D000204 2.0e-07 60.1 85 37.6
Lj5g0002266 Lotus japonicus HOM05D000321 ORTHO05D000204 3.4e-07 59.3 68 39.7
Lalb_Chr23g0267671 Lupinus albus HOM05D000321 ORTHO05D000204 3.4e-07 59.3 78 38.5
QL12p032991 Quercus lobata HOM05D000321 ORTHO05D000204 3.4e-07 59.3 44 56.8
Sc26g0004250 Simmondsia chinensis HOM05D000321 ORTHO05D000204 3.4e-07 59.3 44 54.5
TPR.G30208 Trifolium pratense HOM05D000321 ORTHO05D000204 3.4e-07 59.3 78 39.7
DCAR_009537 Daucus carota HOM05D000321 ORTHO05D000204 4.4e-07 58.9 63 46.0
DCAR_019343 Daucus carota HOM05D000321 ORTHO05D000204 4.4e-07 58.9 48 52.1
Glyma.14G090700 Glycine max HOM05D000321 ORTHO05D000204 4.4e-07 58.9 79 41.8
Glyma.17G232235 Glycine max HOM05D000321 ORTHO05D000204 4.4e-07 58.9 81 40.7
Gohir.A05G212800 Gossypium hirsutum HOM05D000321 ORTHO05D000204 4.4e-07 58.9 44 59.1
BcaB04g20207 Brassica carinata HOM05D000321 ORTHO05D000204 5.8e-07 58.5 75 40.0
Dinv39195 Davidia involucrata HOM05D000321 ORTHO05D000204 5.8e-07 58.5 77 42.9
Os03g0726300 Oryza sativa ssp. japonica HOM05D000321 ORTHO05D000204 7.6e-07 58.2 47 59.6
ECA246G2687 Erigeron canadensis HOM05D000321 ORTHO05D000002 9.9e-07 57.8 102 38.2
TPR.G13040 Trifolium pratense HOM05D000321 ORTHO05D000204 9.9e-07 57.8 77 41.6
Ca_15882_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 1.3e-06 57.4 80 42.5
QL03p070928 Quercus lobata HOM05D000321 ORTHO05D000204 1.3e-06 57.4 42 57.1
CDE02G3346 Ceratophyllum demersum HOM05D000321 ORTHO05D000204 1.7e-06 57.0 68 42.6
CARHR010190 Cardamine hirsuta HOM05D000321 ORTHO05D000204 2.2e-06 56.6 78 39.7
Lsat_1_v5_gn_6_108361 Lactuca sativa HOM05D000321 ORTHO05D000204 2.9e-06 56.2 78 42.3
Lalb_Chr22g0355861 Lupinus albus HOM05D000321 ORTHO05D000204 3.8e-06 55.8 77 42.9
VMungo0647G0363 Vigna mungo HOM05D000321 ORTHO05D000204 3.8e-06 55.8 76 39.5
MBI15_g22234_MAGBIO Magnolia biondii HOM05D000321 ORTHO05D000204 4.9e-06 55.5 44 59.1
AUR62016234 Chenopodium quinoa HOM05D000321 ORTHO05D000204 6.4e-06 55.1 44 47.7
AUR62039255 Chenopodium quinoa HOM05D000321 ORTHO05D000204 6.4e-06 55.1 44 47.7
Gohir.D05G216100 Gossypium hirsutum HOM05D000321 ORTHO05D000204 6.4e-06 55.1 80 41.2
Gorai.009G222800 Gossypium raimondii HOM05D000321 ORTHO05D000204 6.4e-06 55.1 80 41.2
EL10Ac2g02932 Beta vulgaris HOM05D000321 ORTHO05D000204 8.4e-06 54.7 45 48.9


User provided reference genes

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