Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A740T30 Lonicera japonica HOM05D005594 ORTHO05D006403 1.3e-83 313.2 177 100.0
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 3.7e-54 215.3 177 69.5
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 3.7e-54 215.3 177 69.5
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 2.4e-45 186.0 177 60.5
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 4.2e-45 185.3 177 60.5
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 5.4e-45 184.9 177 60.5
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 9.3e-45 184.1 177 66.1
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 1.3e-43 180.3 177 58.8
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 6.6e-43 177.9 177 55.4
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 1.5e-42 176.8 177 54.8
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 1.5e-42 176.8 177 58.8
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 2.5e-42 176.0 179 58.7
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 3.3e-42 175.6 179 59.8
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 5.6e-42 174.9 179 59.8
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 1.6e-41 173.3 177 58.2
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 4.0e-40 168.7 177 53.1
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 5.8e-39 164.9 177 52.0
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 7.6e-39 164.5 178 53.9
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 9.9e-39 164.1 177 55.4
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 9.9e-39 164.1 177 54.8
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 9.9e-39 164.1 177 54.8
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 1.3e-38 163.7 184 52.2
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 1.7e-38 163.3 177 56.5
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 2.2e-38 162.9 177 52.5
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 2.9e-38 162.5 177 54.2
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 3.8e-38 162.2 177 55.4
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 4.9e-38 161.8 177 52.0
PGSC0003DMG400009352 Solanum tuberosum HOM05D005594 ORTHO05D006403 6.4e-38 161.4 177 54.2
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 1.1e-37 160.6 177 54.2
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 7.1e-37 157.9 179 52.5
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 1.6e-36 156.8 177 52.5
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 2.1e-36 156.4 177 51.4
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 3.5e-36 155.6 179 58.1
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 4.6e-36 155.2 182 52.2
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 4.6e-36 155.2 177 53.1
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 6.0e-36 154.8 177 52.0
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 1.3e-35 153.7 197 48.2
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 1.3e-35 153.7 177 52.0
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 1.7e-35 153.3 177 50.3
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 3.9e-35 152.1 179 52.0
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 3.9e-35 152.1 178 52.8
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 1.5e-34 150.2 181 50.3
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 1.5e-34 150.2 178 52.2
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 1.9e-34 149.8 177 49.7
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 2.5e-34 149.4 177 52.0
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 3.3e-34 149.1 177 49.2
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 4.3e-34 148.7 177 48.6
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 5.6e-34 148.3 176 51.7
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 1.6e-33 146.7 178 50.0
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 1.6e-33 146.7 177 48.6
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 1.6e-33 146.7 181 49.7
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 3.6e-33 145.6 177 49.7
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 1.1e-32 144.1 178 47.8
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 1.4e-32 143.7 178 55.1
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 1.4e-32 143.7 178 48.9
SGA_v2.0_scaffold13G06499 Striga asiatica HOM05D005594 ORTHO05D006403 1.4e-32 143.7 178 48.9
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 1.8e-32 143.3 177 48.6
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 1.8e-32 143.3 178 48.9
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 2.4e-32 142.9 181 53.6
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 4.0e-32 142.1 177 46.9
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 4.0e-32 142.1 177 48.0
RcHm_v2.0_Chr7g0234971 Rosa chinensis HOM05D005594 ORTHO05D006403 9.0e-32 141.0 180 47.2
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 1.2e-31 140.6 178 52.8
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 1.5e-31 140.2 178 47.2
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 4.5e-31 138.7 176 46.6
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 4.5e-31 138.7 179 45.8
FAN08G3514 Fragaria x ananassa HOM05D005594 ORTHO05D006403 7.6e-31 137.9 177 45.2
FAN18G0194 Fragaria x ananassa HOM05D005594 ORTHO05D006403 7.6e-31 137.9 177 45.2
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 9.9e-31 137.5 177 44.6
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 1.3e-30 137.1 177 48.0
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 1.7e-30 136.7 177 48.0
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 1.7e-30 136.7 176 46.6
ECA248G0412 Erigeron canadensis HOM05D005594 ORTHO05D006403 3.8e-30 135.6 177 44.6
FvH4_5g34380 Fragaria vesca HOM05D005594 ORTHO05D006403 3.8e-30 135.6 177 44.6
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 4.9e-30 135.2 177 45.2
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 6.4e-30 134.8 179 44.7
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 1.4e-29 133.7 178 46.6
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 1.4e-29 133.7 177 43.5
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 2.4e-29 132.9 177 48.0
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 9.3e-29 131.0 179 48.6
Medtr3g099850 Medicago truncatula HOM05D005594 ORTHO05D006403 1.2e-28 130.6 177 46.9
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 1.2e-28 130.6 177 44.1
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 4.6e-28 128.6 180 46.7
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 6.0e-28 128.3 179 48.0
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 6.0e-28 128.3 177 45.8
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 7.9e-28 127.9 177 45.2
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 7.9e-28 127.9 177 43.5
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 2.3e-27 126.3 178 44.9
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 3.0e-27 125.9 177 45.8
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 3.0e-27 125.9 177 45.8
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 5.1e-27 125.2 181 43.6
Aqoxy4G03010 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 8.7e-27 124.4 163 46.0
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 2.5e-26 122.9 177 44.6
Thhalv10008245m.g Eutrema salsugineum HOM05D005594 ORTHO05D006403 2.5e-26 122.9 177 44.6
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 3.3e-26 122.5 182 43.4
SEGI_07360 Sequoiadendron giganteum HOM05D005594 ORTHO05D006403 5.6e-26 121.7 177 41.8
Lj1g0021697 Lotus japonicus HOM05D005594 ORTHO05D006403 9.6e-26 120.9 177 43.5
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.6e-25 120.2 161 46.0
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 1.6e-25 120.2 177 41.8
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 2.8e-25 119.4 180 43.9
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 2.8e-25 119.4 177 45.8
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 3.7e-25 119.0 161 45.3
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 3.7e-25 119.0 161 45.3
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 4.8e-25 118.6 177 42.9
Ca_26381_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 4.8e-25 118.6 180 43.3
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 8.1e-25 117.9 177 41.8
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 8.1e-25 117.9 177 42.9
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 1.1e-24 117.5 177 42.4
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 1.8e-24 116.7 180 43.9
Ca_11286_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 3.1e-24 115.9 180 42.8
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 1.5e-23 113.6 180 41.7
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 1.3e-22 110.5 177 36.7
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 2.2e-22 109.8 179 40.8
SMO140G0091 Selaginella moellendorffii HOM05D005594 ORTHO05D006403 1.2e-20 104.0 169 38.5
Sed0022235 Sechium edule HOM05D005594 ORTHO05D006403 6.7e-19 98.2 166 42.2
Pp3c26_12080 Physcomitrium patens HOM05D005594 ORTHO05D006403 1.1e-18 97.4 177 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2374 Anthoceros agrestis HOM05D005594 ORTHO05D006403 3.3e-18 95.9 180 34.4
CAN.G375.34 Capsicum annuum HOM05D005594 ORTHO05D006403 7.4e-18 94.7 165 41.8
ClCG11G014680 Citrullus lanatus HOM05D005594 ORTHO05D006403 6.2e-17 91.7 156 40.4
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 5.3e-16 88.6 177 35.6
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 1.0e-14 84.3 183 32.8
HanXRQChr13g0407601 Helianthus annuus HOM05D005594 ORTHO05D006403 1.7e-14 83.6 144 38.2
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.1e-13 80.9 175 33.7
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 7.9e-12 74.7 119 42.9
HPP92_001777 Vanilla planifolia HOM05D005594 ORTHO05D006403 3.3e-10 69.3 83 51.8
MD15G1388800 Malus domestica HOM05D005594 ORTHO05D006403 2.8e-09 66.2 80 48.8
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 2.2e-06 56.6 207 28.0
HanXRQChr17g0561001 Helianthus annuus HOM05D005594 ORTHO05D006403 6.5e-06 55.1 70 44.3
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 8.5e-06 54.7 79 39.2


User provided reference genes

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