Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A718T41 Lonicera japonica HOM05D000108 ORTHO05D235900 3.1e-125 451.8 234 100.0
Lj4C737G6 Lonicera japonica HOM05D000076 ORTHO05D003143 8.2e-41 171.4 272 47.8
Cfa013795 Carpinus fangiana HOM05D000108 ORTHO05D001407 4.5e-23 112.5 110 63.6
Dinv44861 Davidia involucrata HOM05D000108 ORTHO05D001407 5.9e-23 112.1 116 61.2
ECA246G0586 Erigeron canadensis HOM05D000108 ORTHO05D001407 1.0e-22 111.3 105 65.7
Haze_22458 Corylus avellana HOM05D000108 ORTHO05D001407 1.3e-22 110.9 110 62.7
Cpa.g.sc21.19 Carica papaya HOM05D000108 ORTHO05D001407 2.2e-22 110.2 110 60.9
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 1.9e-21 107.1 111 62.2
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 2.5e-21 106.7 112 59.8
Lsat_1_v5_gn_6_104981 Lactuca sativa HOM05D000108 ORTHO05D001407 7.2e-21 105.1 114 56.1
MD08G1198000 Malus domestica HOM05D000108 ORTHO05D001407 9.4e-21 104.8 112 60.7
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 1.2e-20 104.4 112 59.8
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 1.6e-20 104.0 119 58.8
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 2.7e-20 103.2 112 58.0
MD15G1385300 Malus domestica HOM05D000108 ORTHO05D001407 4.7e-20 102.4 112 59.8
HanXRQChr05g0163351 Helianthus annuus HOM05D000108 ORTHO05D001407 8.0e-20 101.7 105 61.9
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 8.0e-20 101.7 111 60.4
GSVIVG01009178001 Vitis vinifera HOM05D000108 ORTHO05D001407 1.4e-19 100.9 112 58.9
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.8e-19 100.5 121 55.4
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 1.8e-19 100.5 121 54.5
COL.COLO4_35247 Corchorus olitorius HOM05D000108 ORTHO05D001407 2.3e-19 100.1 121 54.5
Nn1g05573 Nelumbo nucifera HOM05D000108 ORTHO05D001407 3.0e-19 99.8 112 58.0
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 4.0e-19 99.4 289 36.0
Gohir.D05G222000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 4.0e-19 99.4 121 54.5
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 5.2e-19 99.0 121 53.7
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 6.8e-19 98.6 112 58.9
AL8G37550 Arabidopsis lyrata HOM05D000108 ORTHO05D001407 8.8e-19 98.2 105 57.1
Gorai.009G229400 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.2e-18 97.8 121 53.7
Sc12g0006640 Simmondsia chinensis HOM05D000108 ORTHO05D001407 1.2e-18 97.8 119 53.8
EL10Ac1g00999 Beta vulgaris HOM05D000108 ORTHO05D001407 1.5e-18 97.4 112 56.2
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 1.5e-18 97.4 112 57.1
Actinidia19242 Actinidia chinensis HOM05D000108 ORTHO05D001407 2.0e-18 97.1 289 35.3
arahy.Tifrunner.gnm1.ann1.IE7ZNS Arachis hypogaea HOM05D000108 ORTHO05D001407 2.0e-18 97.1 105 58.1
arahy.Tifrunner.gnm1.ann1.X6V3MP Arachis hypogaea HOM05D000108 ORTHO05D001407 2.0e-18 97.1 105 58.1
LjContig00408g0023522 Lotus japonicus HOM05D000108 ORTHO05D001407 2.0e-18 97.1 114 55.3
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 2.0e-18 97.1 114 56.1
AT5G60930 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 2.6e-18 96.7 110 55.5
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 2.6e-18 96.7 282 35.1
Lalb_Chr17g0344541 Lupinus albus HOM05D000108 ORTHO05D001407 2.6e-18 96.7 105 58.1
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 2.6e-18 96.7 105 57.1
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 4.4e-18 95.9 107 57.0
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 4.4e-18 95.9 107 57.0
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 4.4e-18 95.9 110 57.3
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 4.4e-18 95.9 121 57.0
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 4.4e-18 95.9 111 57.7
Ciclev10000037m.g Citrus clementina HOM05D000108 ORTHO05D001407 5.7e-18 95.5 112 59.8
BcaC06g33206 Brassica carinata HOM05D000108 ORTHO05D001407 7.5e-18 95.1 107 57.0
C07p44710 Brassica napus HOM05D000108 ORTHO05D001407 7.5e-18 95.1 107 57.0
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 9.8e-18 94.7 105 58.1
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 9.8e-18 94.7 132 51.5
Hund26815 Selenicereus undatus HOM05D000108 ORTHO05D001407 1.3e-17 94.4 120 50.0
Thecc.08G070900 Theobroma cacao HOM05D000108 ORTHO05D001407 1.3e-17 94.4 121 52.9
TWI36G0449 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 1.3e-17 94.4 112 55.4
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 1.7e-17 94.0 110 55.5
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 1.7e-17 94.0 110 52.7
CsaV3_3G047980 Cucumis sativus L. HOM05D000108 ORTHO05D001407 2.2e-17 93.6 110 55.5
Oeu049769.1 Olea europaea HOM05D000108 ORTHO05D001407 2.2e-17 93.6 112 56.2
PGR031G0065 Punica granatum HOM05D000108 ORTHO05D001407 2.2e-17 93.6 112 56.2
Sp2g24240 Schrenkiella parvula HOM05D000108 ORTHO05D001407 2.2e-17 93.6 107 59.8
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 2.8e-17 93.2 110 56.4
CARHR274610 Cardamine hirsuta HOM05D000108 ORTHO05D001407 3.7e-17 92.8 107 56.1
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 4.8e-17 92.4 110 55.5
A02p41300 Brassica napus HOM05D000108 ORTHO05D001407 6.3e-17 92.0 112 57.1
BolC7t44994H Brassica oleracea HOM05D000108 ORTHO05D001407 6.3e-17 92.0 108 56.5
BraA02t09076Z Brassica rapa HOM05D000108 ORTHO05D001407 6.3e-17 92.0 112 55.4
Dinv42614 Davidia involucrata HOM05D000108 ORTHO05D001407 6.3e-17 92.0 102 57.8
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 6.3e-17 92.0 105 57.1
THA.LOC104799089 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 6.3e-17 92.0 108 56.5
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 8.3e-17 91.7 110 55.5
DCAR_012856 Daucus carota HOM05D000108 ORTHO05D001407 8.3e-17 91.7 123 50.4
Sed0004579 Sechium edule HOM05D000108 ORTHO05D001407 8.3e-17 91.7 110 53.6
Thhalv10003526m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 1.1e-16 91.3 107 57.9
Aa31LG11G2370 Aethionema arabicum HOM05D000108 ORTHO05D001407 1.4e-16 90.9 107 54.2
Medtr3g100270 Medicago truncatula HOM05D000108 ORTHO05D001407 1.4e-16 90.9 110 52.7
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 1.8e-16 90.5 112 54.5
BcaC03g18065 Brassica carinata HOM05D000108 ORTHO05D001407 2.4e-16 90.1 112 54.5
C02p61270 Brassica napus HOM05D000108 ORTHO05D001407 2.4e-16 90.1 112 54.5
BolC2t12173H Brassica oleracea HOM05D000108 ORTHO05D001407 2.4e-16 90.1 112 54.5
Lj1g0007620 Lotus japonicus HOM05D000108 ORTHO05D001407 2.4e-16 90.1 107 55.1
MSTRG.24429 Avicennia marina HOM05D000108 ORTHO05D001407 4.1e-16 89.4 121 49.6
CANSAT25G0259 Cannabis sativa HOM05D000108 ORTHO05D001407 4.1e-16 89.4 110 53.6
Gorai.010G034800 Gossypium raimondii HOM05D000108 ORTHO05D001407 4.1e-16 89.4 134 47.8
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 4.1e-16 89.4 121 52.9
VMungo1080G0967 Vigna mungo HOM05D000108 ORTHO05D001407 4.1e-16 89.4 116 53.4
Ca_05438_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 5.4e-16 89.0 105 56.2
Medtr5g066320 Medicago truncatula HOM05D000108 ORTHO05D001407 5.4e-16 89.0 105 57.1
Gohir.A06G032400 Gossypium hirsutum HOM05D000108 ORTHO05D001407 7.0e-16 88.6 270 35.9
VMungo0647G1798 Vigna mungo HOM05D000108 ORTHO05D001407 7.0e-16 88.6 103 56.3
Migut.N02859 Erythranthe guttata HOM05D000108 ORTHO05D001407 9.1e-16 88.2 119 50.4
Carub.0008s2162 Capsella rubella HOM05D000108 ORTHO05D001407 1.2e-15 87.8 107 57.9
Lalb_Chr04g0252841 Lupinus albus HOM05D000108 ORTHO05D001407 1.2e-15 87.8 103 56.3
Phvul.002G296500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.2e-15 87.8 116 53.4
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.6e-15 87.4 112 52.7
RcHm_v2.0_Chr7g0236541 Rosa chinensis HOM05D000108 ORTHO05D001407 2.0e-15 87.0 105 58.1
RcHm_v2.0_Chr7g0236691 Rosa chinensis HOM05D000108 ORTHO05D001407 2.0e-15 87.0 105 58.1
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 2.7e-15 86.7 123 51.2
arahy.Tifrunner.gnm1.ann1.2IJU75 Arachis hypogaea HOM05D000108 ORTHO05D001407 3.5e-15 86.3 112 50.9
arahy.Tifrunner.gnm1.ann1.LTM5NF Arachis hypogaea HOM05D000108 ORTHO05D001407 3.5e-15 86.3 112 50.9
Glyma.04G094400 Glycine max HOM05D000108 ORTHO05D001407 3.5e-15 86.3 116 51.7
Gohir.D06G031600 Gossypium hirsutum HOM05D000108 ORTHO05D001407 5.9e-15 85.5 273 35.2
Lalb_Chr08g0242511 Lupinus albus HOM05D000108 ORTHO05D001407 5.9e-15 85.5 112 49.1
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 7.7e-15 85.1 112 57.1
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 1.0e-14 84.7 110 53.6
Psat5g048800 Pisum sativum HOM05D000108 ORTHO05D001407 1.3e-14 84.3 121 47.9
Ca_23442_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 1.7e-14 84.0 109 53.2
SGA_v2.0_scaffold48G17831 Striga asiatica HOM05D000108 ORTHO05D001407 1.7e-14 84.0 120 48.3
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 2.9e-14 83.2 106 52.8
unitig_744.g24110 Utricularia gibba HOM05D000108 ORTHO05D001407 6.5e-14 82.0 119 48.7
DCAR_019314 Daucus carota HOM05D000108 ORTHO05D001407 8.6e-14 81.6 94 56.4
PSO541G4558 Papaver somniferum HOM05D000108 ORTHO05D001407 8.6e-14 81.6 106 51.9
Solyc04g076310.4 Solanum lycopersicum HOM05D000108 ORTHO05D001407 8.6e-14 81.6 111 55.0
Sopen04g030110 Solanum pennellii HOM05D000108 ORTHO05D001407 8.6e-14 81.6 111 55.0
PGSC0003DMG400009361 Solanum tuberosum HOM05D000108 ORTHO05D001407 8.6e-14 81.6 111 55.0
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 1.1e-13 81.3 110 52.7
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 1.5e-13 80.9 105 50.5
Psat2g065520 Pisum sativum HOM05D000108 ORTHO05D001407 1.6e-12 77.4 105 54.3
ATR0767G158 Amborella trichopoda HOM05D000108 ORTHO05D001407 2.1e-12 77.0 115 51.3
TPR.G34715 Trifolium pratense HOM05D000108 ORTHO05D001407 2.1e-12 77.0 105 52.4
unitig_21.g20613 Utricularia gibba HOM05D000108 ORTHO05D001407 2.1e-12 77.0 119 48.7
Zm00001eb254290 Zea mays HOM05D000108 ORTHO05D001407 2.8e-12 76.6 105 54.3
HPP92_010908 Vanilla planifolia HOM05D000108 ORTHO05D001407 4.7e-12 75.9 120 48.3
Zm00001eb254320 Zea mays HOM05D000108 ORTHO05D001407 4.7e-12 75.9 105 53.3
CAN.G475.30 Capsicum annuum HOM05D000108 ORTHO05D001407 6.1e-12 75.5 120 48.3
Peaxi162Scf00454g00523 Petunia axillaris HOM05D000108 ORTHO05D001407 1.0e-11 74.7 116 51.7
TPR.G6308 Trifolium pratense HOM05D000108 ORTHO05D001407 1.4e-11 74.3 112 48.2
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 3.4e-10 69.7 119 46.2
CDE01G0713 Ceratophyllum demersum HOM05D000108 ORTHO05D001407 1.1e-08 64.7 115 45.2
Carub.0004s0906 Capsella rubella HOM05D000108 ORTHO05D001407 2.4e-08 63.5 80 51.2
Os02g0742800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 3.1e-08 63.2 114 43.0
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.2e-07 61.2 107 48.6
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 1.6e-07 60.8 107 48.6
FAN04G1245 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.6e-07 60.8 107 48.6
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.9e-07 58.9 107 47.7
MD02G1176500 Malus domestica HOM05D000108 ORTHO05D001407 7.8e-07 58.5 114 42.1
Sabra07G0041700 Salix brachista HOM05D000108 ORTHO05D001407 3.8e-06 56.2 134 37.3
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.0e-06 55.8 107 45.8
Potri.007G046700 Populus trichocarpa HOM05D000108 ORTHO05D001407 6.6e-06 55.5 134 37.3


User provided reference genes

Program Settings