Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A710G53 Lonicera japonica HOM05D003898 ORTHO05D004642 1.0e-26 122.5 55 100.0
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-08 62.4 52 53.8
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 6.3e-08 60.1 31 77.4
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-07 59.3 31 80.6
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.4e-07 58.9 31 80.6
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.4e-07 58.9 29 79.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.4e-07 58.2 29 79.3
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.4e-07 58.2 29 79.3
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.4e-07 58.2 29 72.4
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.4e-07 58.2 29 75.9
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.1e-07 57.8 29 75.9
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.1e-07 57.4 29 79.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 4.1e-07 57.4 32 75.0
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 4.1e-07 57.4 29 79.3
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 6.9e-07 56.6 29 75.9
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 6.9e-07 56.6 29 75.9
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 6.9e-07 56.6 40 60.0
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 6.9e-07 56.6 29 72.4
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 9.0e-07 56.2 29 72.4
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 9.0e-07 56.2 29 79.3
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 9.0e-07 56.2 28 78.6
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 9.0e-07 56.2 29 75.9
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 65.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 75.9
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 75.9
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 75.9
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 75.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 75.9
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.2e-06 55.8 29 75.9
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.5e-06 55.5 29 72.4
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.5e-06 55.5 29 72.4
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-06 55.5 29 72.4
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.5e-06 55.5 32 75.0
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.5e-06 55.5 29 75.9
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.0e-06 55.1 29 72.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.0e-06 55.1 29 72.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.0e-06 55.1 29 75.9
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 2.0e-06 55.1 29 69.0
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.0e-06 55.1 29 79.3
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.6e-06 54.7 29 75.9
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.6e-06 54.7 29 72.4
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 3.4e-06 54.3 31 71.0
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 72.4
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 75.9
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 69.0
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 75.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 75.9
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 72.4
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 3.4e-06 54.3 29 69.0
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.5e-06 53.9 28 75.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 4.5e-06 53.9 29 75.9
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.5e-06 53.9 29 75.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 4.5e-06 53.9 29 75.9
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.9e-06 53.5 29 65.5
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.9e-06 53.5 29 75.9
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.9e-06 53.5 29 75.9
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 5.9e-06 53.5 29 72.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 5.9e-06 53.5 29 65.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 7.7e-06 53.1 29 69.0
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 7.7e-06 53.1 27 74.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 7.7e-06 53.1 29 65.5
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 7.7e-06 53.1 29 62.1
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 7.7e-06 53.1 29 69.0
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 7.7e-06 53.1 32 68.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 7.7e-06 53.1 29 72.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-05 52.8 29 69.0
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.0e-05 52.8 28 71.4
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.0e-05 52.8 28 71.4
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.0e-05 52.8 29 69.0
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.0e-05 52.8 29 72.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.0e-05 52.8 29 65.5
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.0e-05 52.8 29 69.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.0e-05 52.8 29 69.0


User provided reference genes

Program Settings