Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.6e-77 292.0 145 100.0
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 2.8e-55 218.8 155 70.3
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 6.2e-55 217.6 167 65.3
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 2.0e-53 212.6 164 68.3
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.3e-52 209.9 156 67.3
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.8e-52 208.4 149 66.4
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 4.6e-50 201.4 152 65.1
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 4.6e-50 201.4 153 64.1
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 6.0e-50 201.1 157 67.5
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 6.0e-50 201.1 144 68.8
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.0e-49 200.3 160 63.8
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.3e-49 199.9 156 64.7
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.7e-49 199.5 157 64.3
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.7e-49 199.5 156 63.5
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.3e-49 199.1 155 64.5
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 5.1e-49 198.0 146 67.1
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.6e-49 197.6 155 65.8
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 6.6e-49 197.6 156 65.4
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.1e-48 196.8 156 64.7
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.5e-48 196.4 152 63.8
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.9e-48 196.1 136 67.6
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 4.3e-48 194.9 162 62.3
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 5.6e-48 194.5 157 63.7
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.3e-48 194.1 155 65.2
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 7.3e-48 194.1 149 65.8
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 7.3e-48 194.1 158 63.9
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.2e-47 193.4 127 77.2
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 2.1e-47 192.6 152 63.2
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.8e-47 192.2 155 62.6
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-47 191.8 152 62.5
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 3.6e-47 191.8 154 65.6
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.1e-46 190.3 154 63.6
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.1e-46 190.3 157 63.1
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 1.8e-46 189.5 159 62.3
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.4e-46 189.1 152 62.5
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.4e-46 189.1 159 62.3
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 4.0e-46 188.3 157 63.1
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 6.9e-46 187.6 158 58.9
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 6.9e-46 187.6 161 59.6
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 6.9e-46 187.6 157 60.5
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.2e-45 186.8 161 58.4
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.2e-45 186.8 154 62.3
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.5e-45 186.4 150 64.0
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.5e-45 186.4 161 61.5
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.0e-45 186.0 157 56.1
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 2.0e-45 186.0 132 65.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 2.0e-45 186.0 160 58.1
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 4.4e-45 184.9 161 58.4
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 7.6e-45 184.1 159 62.3
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 9.9e-45 183.7 149 63.8
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 9.9e-45 183.7 144 64.6
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.7e-44 183.0 160 61.2
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 8.4e-44 180.6 154 58.4
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 1.4e-43 179.9 159 59.7
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.9e-43 179.5 157 60.5
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 3.2e-43 178.7 158 60.1
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 3.2e-43 178.7 158 60.1
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 3.2e-43 178.7 154 61.0
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 4.2e-43 178.3 155 59.4
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 5.4e-43 177.9 179 52.0
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 7.1e-43 177.6 157 59.2
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.2e-42 176.8 156 59.0
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 2.1e-42 176.0 155 57.4
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 2.1e-42 176.0 156 59.6
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 2.1e-42 176.0 150 59.3
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 6.0e-42 174.5 155 58.7
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 6.0e-42 174.5 155 61.3
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 6.0e-42 174.5 146 59.6
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 6.0e-42 174.5 154 60.4
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 7.8e-42 174.1 142 59.2
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 7.8e-42 174.1 145 59.3
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 1.0e-41 173.7 167 53.9
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.0e-41 173.7 164 57.3
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 1.7e-41 172.9 154 56.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 2.3e-41 172.6 150 58.7
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 3.9e-41 171.8 155 54.8
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 5.1e-41 171.4 142 62.7
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 6.6e-41 171.0 138 62.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 8.7e-41 170.6 122 63.9
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 1.1e-40 170.2 159 59.1
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 1.5e-40 169.9 122 63.1
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.5e-40 169.1 128 61.7
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.5e-40 169.1 155 53.5
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.5e-40 169.1 155 53.5
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 3.3e-40 168.7 128 62.5
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 5.6e-40 167.9 151 56.3
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 5.6e-40 167.9 148 57.4
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 7.3e-40 167.5 143 62.2
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 7.3e-40 167.5 156 56.4
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 9.6e-40 167.2 154 54.5
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.3e-39 166.8 125 65.6
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.6e-39 166.4 143 61.5
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.6e-39 166.4 143 61.5
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.6e-39 166.4 151 55.6
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.1e-39 166.0 140 57.9
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 2.8e-39 165.6 145 55.9
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 2.8e-39 165.6 151 55.6
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 2.8e-39 165.6 151 55.6
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 2.8e-39 165.6 131 63.4
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.6e-39 165.2 153 53.6
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 4.8e-39 164.9 157 54.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 4.8e-39 164.9 166 51.2
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 6.2e-39 164.5 151 55.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 4.0e-38 161.8 143 59.4
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 3.4e-37 158.7 121 62.0
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 4.9e-36 154.8 122 63.1
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.4e-35 153.3 115 67.8
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 2.4e-35 152.5 106 67.9
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 3.2e-35 152.1 115 62.6
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 9.3e-35 150.6 146 54.1
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.3e-33 146.7 80 80.0
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.8e-33 146.4 131 59.5
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 2.4e-30 136.0 139 53.2
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 2.4e-30 136.0 158 46.8
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.7e-28 129.8 122 51.6
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.7e-28 129.8 122 51.6
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.9e-27 126.3 124 50.8
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.9e-27 126.3 111 58.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.1e-27 124.4 114 51.8
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.2e-26 123.6 158 44.3
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.7e-26 122.5 120 50.0
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 4.6e-26 121.7 128 46.1
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 7.6e-21 104.4 79 58.2
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.8e-17 93.2 142 35.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.8e-14 83.2 74 48.6
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.2e-13 80.5 123 33.3
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 1.7e-12 76.6 64 56.2
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 3.2e-11 72.4 72 51.4
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 5.1e-09 65.1 143 37.1
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.5e-08 63.5 114 27.2
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.5e-08 62.8 41 68.3
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.3e-08 62.4 77 33.8
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.3e-07 60.5 38 71.1
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 3.7e-07 58.9 37 73.0
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.8e-06 56.6 38 71.1
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 2.4e-06 56.2 38 65.8


User provided reference genes

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