Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 4.6e-66 254.6 147 100.0
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.8e-47 191.4 146 78.8
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.0e-45 186.0 149 73.8
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.4e-45 185.3 156 69.9
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 4.5e-45 184.9 156 75.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.3e-44 183.3 150 72.0
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.2e-44 182.6 145 69.0
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.9e-44 182.2 147 76.2
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.9e-44 182.2 155 71.6
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.9e-44 182.2 150 74.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 6.5e-44 181.0 156 69.2
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.5e-44 181.0 150 76.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.1e-43 180.3 155 67.7
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.1e-43 180.3 146 77.4
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.1e-43 180.3 138 77.5
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.4e-43 179.9 152 75.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.9e-43 179.5 153 74.5
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.5e-43 179.1 147 78.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 4.2e-43 178.3 146 76.7
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.2e-43 178.3 148 77.7
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.5e-43 177.9 155 72.9
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 7.2e-43 177.6 146 71.9
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 7.2e-43 177.6 145 65.5
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 9.4e-43 177.2 156 64.1
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.2e-42 176.8 146 74.7
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.2e-42 176.8 151 75.5
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.2e-42 176.8 148 70.3
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-42 176.8 154 76.0
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.2e-42 176.8 148 67.6
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.2e-42 176.8 145 64.8
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.1e-42 176.0 148 72.3
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 3.6e-42 175.3 150 67.3
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 4.7e-42 174.9 147 75.5
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 4.7e-42 174.9 147 75.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.7e-42 174.9 150 75.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 4.7e-42 174.9 148 65.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 6.1e-42 174.5 150 67.3
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 6.1e-42 174.5 151 70.2
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 6.1e-42 174.5 152 66.4
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.0e-41 173.7 144 76.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.0e-41 173.7 150 68.7
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.0e-41 173.7 155 72.3
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.4e-41 173.3 147 73.5
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.4e-41 173.3 151 73.5
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-41 172.9 147 69.4
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.8e-41 172.9 147 73.5
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.3e-41 172.6 143 75.5
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.3e-41 172.6 147 68.7
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.3e-41 172.6 147 70.7
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.0e-41 172.2 147 76.2
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 3.0e-41 172.2 147 68.0
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 3.9e-41 171.8 148 75.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.9e-41 171.8 141 78.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.9e-41 171.8 147 74.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.9e-41 171.8 150 71.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 6.7e-41 171.0 148 72.3
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.7e-41 171.0 150 74.7
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 6.7e-41 171.0 151 68.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 6.7e-41 171.0 147 73.5
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 6.7e-41 171.0 148 72.3
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 8.8e-41 170.6 150 74.7
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.1e-40 170.2 143 74.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.1e-40 170.2 147 71.4
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.5e-40 169.9 148 71.6
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.5e-40 169.9 148 74.3
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.5e-40 169.9 147 63.3
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-40 169.9 146 69.2
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-40 169.9 147 71.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.5e-40 169.9 153 72.5
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.5e-40 169.9 150 74.7
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.5e-40 169.9 157 70.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.0e-40 169.5 150 74.7
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.6e-40 169.1 148 71.6
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 3.3e-40 168.7 145 73.1
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.3e-40 168.7 146 69.2
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 4.4e-40 168.3 147 72.8
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.7e-40 167.9 150 74.0
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 5.7e-40 167.9 148 64.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 7.4e-40 167.5 148 74.3
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 9.7e-40 167.2 148 75.7
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.3e-39 166.8 153 73.9
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.7e-39 166.4 155 68.4
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.7e-39 166.4 156 71.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.2e-39 166.0 150 66.7
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.8e-39 165.6 146 64.4
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.8e-39 165.6 148 62.2
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.7e-39 165.2 157 68.2
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.7e-39 165.2 157 68.2
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 4.8e-39 164.9 141 78.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.3e-39 164.5 131 65.6
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 6.3e-39 164.5 153 71.9
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 6.3e-39 164.5 157 70.1
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.1e-38 163.7 139 74.8
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.4e-38 163.3 147 69.4
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.4e-38 163.3 149 67.8
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.8e-38 162.9 138 68.8
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.8e-38 162.9 157 72.0
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 2.4e-38 162.5 144 72.9
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 3.1e-38 162.2 151 69.5
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 9.1e-38 160.6 138 75.4
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.6e-37 159.8 181 59.7
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.0e-37 159.5 148 62.8
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 3.5e-37 158.7 148 66.9
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 3.5e-37 158.7 148 70.3
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 7.7e-37 157.5 156 68.6
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-36 157.1 141 72.3
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.3e-36 156.8 142 72.5
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.7e-36 156.4 143 72.7
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.2e-36 156.0 162 58.6
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.9e-35 152.9 146 70.5
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.5e-35 152.5 84 88.1
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.2e-35 152.1 87 86.2
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 3.2e-35 152.1 84 86.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 5.5e-35 151.4 155 65.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 5.5e-35 151.4 149 65.8
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 9.4e-35 150.6 156 66.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.6e-34 149.8 150 61.3
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.7e-34 149.1 157 56.7
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 3.6e-34 148.7 148 58.8
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 3.6e-34 148.7 161 55.3
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 5.2e-33 144.8 140 69.3
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 9.7e-32 140.6 137 61.3
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.8e-31 138.3 75 89.3
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 6.3e-31 137.9 123 72.4
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.3e-28 130.2 138 66.7
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.2e-28 129.4 70 88.6
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.2e-26 123.6 69 81.2
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 5.2e-25 118.2 151 58.3
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.2e-24 117.1 110 72.7
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 2.8e-23 112.5 66 81.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 6.3e-23 111.3 71 80.3
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 6.3e-23 111.3 82 63.4
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 9.1e-22 107.5 152 52.6
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 7.7e-21 104.4 91 56.0
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 6.6e-20 101.3 80 60.0
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.1e-19 100.5 83 54.2
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.5e-19 100.1 114 64.0
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 7.2e-19 97.8 114 52.6
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.2e-15 86.3 53 79.2
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 2.2e-15 86.3 117 62.4
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.8e-14 83.2 127 57.5
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.5e-11 73.6 108 62.0
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 2.8e-10 69.3 67 53.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.2e-07 59.7 39 61.5


User provided reference genes

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