Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 1.2e-197 693.0 354 100.0
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 1.2e-155 553.5 366 79.2
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 4.9e-154 548.1 355 78.6
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 2.0e-152 542.7 357 79.6
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 2.7e-152 542.3 354 79.1
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 1.0e-151 540.4 354 78.5
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 1.3e-151 540.0 359 78.8
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 1.7e-151 539.7 354 79.1
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 9.5e-150 533.9 361 75.6
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 3.6e-149 531.9 353 77.1
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 1.4e-148 530.0 360 77.5
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 2.3e-148 529.3 354 78.0
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 5.2e-148 528.1 352 76.7
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 8.9e-148 527.3 353 75.9
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 7.5e-147 524.2 344 78.8
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 9.9e-147 523.9 357 76.2
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 1.3e-146 523.5 322 81.1
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 3.7e-146 521.9 330 80.9
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 1.1e-145 520.4 332 78.3
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 2.4e-145 519.2 346 77.2
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 4.1e-145 518.5 335 80.3
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 7.1e-145 517.7 331 79.8
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 7.1e-145 517.7 336 79.8
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 1.2e-144 516.9 367 72.8
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 1.2e-144 516.9 352 76.1
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 6.0e-144 514.6 351 77.5
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 7.8e-144 514.2 351 76.4
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 3.9e-143 511.9 355 75.5
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 5.1e-143 511.5 324 79.9
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 1.1e-142 510.4 345 77.1
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 1.5e-142 510.0 362 73.2
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 3.3e-142 508.8 352 73.6
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 3.3e-142 508.8 357 74.5
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 5.6e-142 508.1 357 73.4
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 5.6e-142 508.1 358 74.3
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 1.2e-141 506.9 355 74.1
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 2.1e-141 506.1 358 74.0
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 2.1e-141 506.1 358 73.7
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 2.1e-141 506.1 351 74.4
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 8.1e-141 504.2 329 76.9
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 1.1e-140 503.8 345 76.2
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 1.4e-140 503.4 307 82.4
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 4.0e-140 501.9 346 74.3
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 5.2e-140 501.5 416 68.0
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 6.8e-140 501.1 326 77.6
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 8.9e-140 500.7 346 74.3
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 1.2e-139 500.4 325 78.8
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 2.0e-139 499.6 347 73.8
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 2.6e-139 499.2 357 73.1
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 5.8e-139 498.0 319 78.7
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 5.8e-139 498.0 357 72.5
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 1.3e-138 496.9 304 81.6
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 2.9e-138 495.7 305 82.3
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 2.4e-137 492.7 330 77.9
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 1.2e-136 490.3 280 85.4
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.2e-136 490.3 354 72.6
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 1.2e-136 490.3 309 81.2
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 2.1e-136 489.6 329 76.0
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 3.5e-136 488.8 324 77.5
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 4.6e-136 488.4 361 70.4
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 7.8e-136 487.6 357 71.1
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 7.8e-136 487.6 351 73.8
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 1.0e-135 487.3 354 72.0
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 1.0e-135 487.3 304 80.6
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 1.3e-135 486.9 299 82.9
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 1.7e-135 486.5 358 71.2
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 2.3e-135 486.1 358 71.5
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 3.0e-135 485.7 354 70.9
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 1.1e-134 483.8 336 74.1
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 3.3e-134 482.3 361 72.3
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 3.3e-134 482.3 361 72.3
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 7.3e-134 481.1 355 70.4
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 4.7e-133 478.4 303 79.5
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 2.4e-132 476.1 331 74.0
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 1.5e-131 473.4 308 77.9
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 1.5e-131 473.4 308 77.9
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 1.6e-128 463.4 326 73.6
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 3.9e-127 458.8 287 79.1
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 1.9e-121 439.9 427 57.4
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 9.3e-121 437.6 300 73.7
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 2.7e-120 436.0 476 53.2
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 3.0e-119 432.6 331 67.4
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 6.2e-117 424.9 300 72.3
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.3e-114 417.2 305 69.2
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 1.7e-114 416.8 335 64.5
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 1.1e-113 414.1 309 69.3
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.0e-111 407.5 286 71.0
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 8.7e-111 404.4 313 66.5
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 8.2e-109 397.9 453 51.2
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 1.4e-105 387.1 282 73.0
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 2.1e-104 383.3 212 88.2
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 9.7e-102 374.4 325 60.6
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 7.2e-97 358.2 209 85.2
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 1.2e-91 340.9 201 83.6
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 3.8e-90 335.9 357 54.6
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 1.8e-87 327.0 320 54.1
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 3.3e-86 322.8 169 92.9
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 8.5e-82 308.1 203 76.8
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.1e-78 297.7 238 69.3
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.1e-78 297.7 238 69.3
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 4.8e-77 292.4 194 76.3
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.1e-76 291.2 194 75.8
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 7.0e-76 288.5 163 87.7
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 4.5e-75 285.8 336 51.5
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.7e-74 283.9 189 77.8
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 3.2e-73 279.6 167 82.0
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 6.1e-72 275.4 255 52.9
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 9.7e-70 268.1 151 86.1
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 3.6e-64 249.6 188 69.1
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 3.7e-61 239.6 210 62.9
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 1.1e-60 238.0 148 77.7
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 4.1e-60 236.1 271 47.2
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 9.8e-54 214.9 140 77.1
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.3e-45 188.0 108 86.1
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 1.2e-38 164.9 97 78.4
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 2.1e-32 144.1 238 37.0
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 2.8e-32 143.7 80 91.2
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 4.7e-32 142.9 111 64.0
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.3e-25 119.8 258 35.7
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.3e-21 108.2 100 53.0
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 6.9e-15 85.9 48 79.2
AagrBONN_evm.TU.Sc2ySwM_228.4528 Anthoceros agrestis HOM05D006546 ORTHO05D008362 4.6e-11 73.2 58 65.5
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.6e-08 64.7 71 49.3


User provided reference genes

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