Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 8.5e-66 253.4 121 100.0
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 5.4e-44 181.0 111 70.3
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 7.0e-44 180.6 111 69.4
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 1.6e-43 179.5 111 67.6
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 2.0e-43 179.1 111 70.3
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.7e-43 178.7 110 68.2
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.7e-43 178.7 110 68.2
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 7.7e-43 177.2 111 67.6
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.0e-42 176.8 111 66.7
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 1.3e-42 176.4 110 69.1
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.5e-41 172.9 111 68.5
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 2.5e-41 172.2 109 65.1
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 4.2e-41 171.4 111 64.9
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 5.5e-41 171.0 111 65.8
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.0e-39 166.8 111 64.9
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.8e-39 166.0 109 64.2
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 2.3e-39 165.6 111 63.1
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 3.0e-39 165.2 111 63.1
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.0e-39 164.9 111 63.1
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 5.2e-39 164.5 111 66.7
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 5.2e-39 164.5 111 62.2
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.2e-38 163.3 115 60.9
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.2e-38 163.3 111 63.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.2e-38 163.3 111 65.8
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.5e-38 162.9 111 61.3
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.0e-38 162.5 111 60.4
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 2.0e-38 162.5 111 62.2
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 3.4e-38 161.8 111 60.4
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 5.7e-38 161.0 111 58.6
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 5.7e-38 161.0 111 64.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 9.8e-38 160.2 104 63.5
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.3e-37 159.8 109 63.3
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.8e-37 158.7 111 60.4
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 3.7e-37 158.3 106 63.2
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 6.3e-37 157.5 111 62.2
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.1e-36 156.8 122 57.4
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-36 156.4 111 58.6
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-36 156.4 111 58.6
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 2.4e-36 155.6 109 60.6
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 3.1e-36 155.2 111 57.7
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.1e-36 155.2 111 57.7
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.1e-36 155.2 109 59.6
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.1e-36 155.2 109 59.6
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 3.1e-36 155.2 109 58.7
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 3.1e-36 155.2 122 54.1
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.4e-36 154.5 111 58.6
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.4e-36 154.5 111 58.6
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 5.4e-36 154.5 105 63.8
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 7.0e-36 154.1 109 58.7
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 7.0e-36 154.1 111 61.3
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 7.0e-36 154.1 111 60.4
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-35 152.9 111 56.8
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.6e-35 152.9 111 57.7
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.0e-35 152.5 111 57.7
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.0e-35 152.5 111 57.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 2.7e-35 152.1 120 59.2
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.7e-35 152.1 111 58.6
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.5e-35 151.8 111 56.8
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.5e-35 151.8 111 56.8
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 7.8e-35 150.6 111 57.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 7.8e-35 150.6 111 55.9
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.0e-34 150.2 109 56.0
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.3e-34 149.8 111 56.8
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.3e-34 149.8 111 60.4
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.7e-34 149.4 111 56.8
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.7e-34 149.4 111 57.7
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 1.7e-34 149.4 137 52.6
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.3e-34 149.1 111 56.8
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.9e-34 148.7 111 56.8
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.8e-34 148.3 111 56.8
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 3.8e-34 148.3 111 56.8
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 3.8e-34 148.3 111 56.8
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.8e-34 148.3 111 56.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 5.0e-34 147.9 109 58.7
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.6e-34 147.5 111 56.8
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 8.6e-34 147.1 111 59.5
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 8.6e-34 147.1 112 58.9
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 1.5e-33 146.4 111 55.9
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.5e-33 146.4 105 59.0
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.5e-33 145.6 113 54.9
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 2.5e-33 145.6 111 55.0
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.3e-33 145.2 109 59.6
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.3e-33 144.8 108 56.5
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 5.6e-33 144.4 111 55.0
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 5.6e-33 144.4 111 55.0
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 7.3e-33 144.1 111 54.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 7.3e-33 144.1 95 66.3
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 9.5e-33 143.7 108 55.6
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 9.5e-33 143.7 108 55.6
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-32 143.3 108 54.6
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-32 143.3 108 54.6
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-32 143.3 108 54.6
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.2e-32 143.3 108 54.6
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.2e-32 143.3 108 54.6
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.2e-32 143.3 111 54.1
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 1.6e-32 142.9 109 56.0
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 1.6e-32 142.9 109 56.0
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.1e-32 142.5 111 55.0
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.1e-32 142.5 111 55.0
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.1e-32 142.5 111 55.0
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 4.7e-32 141.4 113 54.0
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 4.7e-32 141.4 111 55.0
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.1e-32 141.0 108 54.6
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 8.0e-32 140.6 109 58.7
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 8.0e-32 140.6 148 46.6
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.0e-31 140.2 111 53.2
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.0e-31 140.2 109 58.7
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.8e-31 139.4 109 57.8
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 3.0e-31 138.7 127 52.8
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 4.0e-31 138.3 111 52.3
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 5.2e-31 137.9 109 54.1
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 3.4e-30 135.2 75 73.3
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.4e-30 135.2 110 56.4
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.4e-30 135.2 110 56.4
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 2.9e-29 132.1 108 54.6
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.4e-28 129.8 84 67.9
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.8e-28 129.4 144 42.4
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 5.9e-27 124.4 112 49.1
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.1e-24 115.9 90 54.4
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.4e-23 113.2 133 40.6
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.8e-23 112.8 99 50.5
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.0e-23 111.7 76 57.9
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 2.6e-22 109.0 110 45.5
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.6e-22 109.0 110 45.5
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.6e-22 109.0 131 42.0
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 5.8e-22 107.8 62 71.0
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 9.8e-22 107.1 110 46.4
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.2e-21 105.9 81 50.6
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 3.7e-21 105.1 81 56.8
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.1e-20 103.6 109 45.9
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 7.0e-20 100.9 94 47.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.2e-19 100.1 83 59.0
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.0e-19 99.4 92 45.7
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 2.7e-19 99.0 120 40.8
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 3.3e-17 92.0 60 61.7
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 3.1e-15 85.5 107 35.5
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.8e-15 84.3 60 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 4.4e-14 81.6 101 33.7
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.7e-13 79.7 107 34.6
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.4e-07 60.1 83 32.5
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 7.6e-06 54.3 50 44.0
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 7.6e-06 54.3 104 31.7


User provided reference genes

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