Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 2.0e-112 409.1 205 100.0
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 1.1e-110 403.3 205 98.0
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 1.1e-78 297.0 204 73.0
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 6.2e-77 291.2 208 69.7
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 1.4e-76 290.0 203 73.4
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 3.1e-76 288.9 204 73.5
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 3.8e-74 282.0 203 71.4
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 1.4e-73 280.0 207 69.1
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 2.4e-73 279.3 195 72.3
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 3.2e-73 278.9 206 69.9
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 4.2e-73 278.5 203 70.4
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 9.3e-73 277.3 207 69.6
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 9.3e-73 277.3 206 70.4
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 1.2e-72 276.9 207 70.0
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 3.5e-72 275.4 201 68.2
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.5e-72 275.4 204 71.6
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 7.9e-72 274.2 204 71.1
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.3e-71 273.5 203 70.4
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 1.3e-71 273.5 203 70.4
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 1.8e-71 273.1 207 69.6
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.0e-71 272.3 204 70.6
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.9e-71 271.9 204 70.6
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 6.7e-71 271.2 206 66.0
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 8.7e-71 270.8 203 69.5
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 1.1e-70 270.4 206 69.9
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 1.9e-70 269.6 205 69.8
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 4.3e-70 268.5 207 68.6
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 7.4e-70 267.7 193 70.5
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 1.3e-69 266.9 204 69.1
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 1.6e-69 266.5 199 68.3
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 2.8e-69 265.8 202 66.8
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 3.7e-69 265.4 198 67.2
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 3.7e-69 265.4 203 67.5
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 4.8e-69 265.0 203 68.5
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 8.1e-69 264.2 203 66.0
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 3.1e-68 262.3 199 68.3
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 3.1e-68 262.3 206 68.4
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 5.3e-68 261.5 210 65.2
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 1.2e-67 260.4 206 66.0
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 1.2e-67 260.4 199 69.3
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.5e-67 260.0 195 68.7
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 2.0e-67 259.6 206 65.0
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 3.4e-67 258.8 207 65.7
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 5.8e-67 258.1 206 67.5
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 7.6e-67 257.7 206 67.0
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 1.7e-66 256.5 194 67.0
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-66 256.1 152 77.6
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 2.2e-66 256.1 204 66.2
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 4.9e-66 255.0 206 65.0
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 6.5e-66 254.6 203 66.5
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 1.1e-65 253.8 192 67.2
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 1.4e-65 253.4 197 65.0
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 9.3e-65 250.8 183 69.9
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 1.2e-64 250.4 194 65.5
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 1.6e-64 250.0 200 66.5
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 2.1e-64 249.6 195 64.6
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 3.5e-64 248.8 183 69.4
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 3.5e-64 248.8 198 64.1
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 6.0e-64 248.1 186 68.3
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 7.9e-64 247.7 202 63.4
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 1.3e-63 246.9 202 64.4
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 1.3e-63 246.9 202 64.4
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 1.3e-63 246.9 202 65.3
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 1.8e-63 246.5 206 63.6
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.8e-63 246.5 202 63.4
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 3.0e-63 245.7 198 64.6
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 3.9e-63 245.4 189 65.6
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 7.4e-62 241.1 200 63.0
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 2.8e-61 239.2 198 63.1
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 4.8e-61 238.4 201 65.2
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 4.8e-61 238.4 217 60.4
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.8e-60 236.5 203 61.6
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 2.4e-60 236.1 181 67.4
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 4.1e-60 235.3 198 62.6
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 4.1e-60 235.3 197 63.5
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 5.3e-60 235.0 201 63.2
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 9.0e-60 234.2 197 61.9
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 2.6e-59 232.6 178 65.2
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 1.7e-58 229.9 163 71.2
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 1.7e-58 229.9 168 72.0
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 2.2e-58 229.6 196 61.2
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 2.9e-58 229.2 192 62.5
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 5.0e-58 228.4 125 84.8
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 5.0e-58 228.4 178 63.5
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 8.5e-58 227.6 197 61.4
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.5e-58 227.6 204 62.3
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 1.1e-57 227.3 166 68.1
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 1.1e-57 227.3 166 68.1
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 3.2e-57 225.7 197 60.4
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 5.5e-57 224.9 197 60.4
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 5.5e-57 224.9 197 60.4
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 2.7e-56 222.6 181 63.5
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 1.9e-54 216.5 134 75.4
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 4.1e-52 208.8 166 65.1
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 2.2e-50 203.0 173 60.7
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 5.0e-50 201.8 155 67.1
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 1.9e-49 199.9 129 70.5
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 1.7e-42 176.8 131 62.6
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 5.0e-42 175.3 144 63.9
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 1.1e-41 174.1 136 58.1
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 4.2e-41 172.2 126 64.3
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 5.7e-38 161.8 141 60.3
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 4.1e-36 155.6 129 58.9
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 1.2e-35 154.1 90 75.6
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 6.5e-34 148.3 168 46.4
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 3.0e-31 139.4 138 54.3
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 6.7e-31 138.3 186 47.8
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 1.2e-27 127.5 195 44.6
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.3e-23 113.2 133 51.9
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 8.3e-21 104.8 69 68.1
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.7e-13 80.5 127 44.1


User provided reference genes

Program Settings