Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 2.2e-111 405.6 197 100.0
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 3.5e-101 371.7 196 92.9
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 2.8e-98 362.1 196 87.2
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 6.1e-98 360.9 195 89.2
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 6.1e-98 360.9 195 89.2
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 6.1e-98 360.9 196 89.3
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.4e-97 359.8 196 86.7
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.8e-97 359.4 196 88.3
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 1.8e-97 359.4 196 87.2
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.8e-97 359.4 196 88.3
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 4.0e-97 358.2 196 86.2
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 4.0e-97 358.2 196 88.3
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 6.8e-97 357.5 195 87.7
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 6.8e-97 357.5 196 87.8
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.2e-96 356.7 191 89.5
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.0e-96 355.9 196 87.8
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.0e-96 355.9 191 90.1
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 2.6e-96 355.5 196 87.8
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 3.4e-96 355.1 196 86.7
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 5.8e-96 354.4 196 87.2
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.8e-96 354.4 196 87.2
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.8e-96 354.4 196 87.2
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.8e-96 354.4 196 87.2
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 5.8e-96 354.4 196 87.2
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 9.8e-96 353.6 195 87.2
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 9.8e-96 353.6 195 87.2
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.3e-95 353.2 191 88.5
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.3e-95 353.2 191 88.5
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 1.3e-95 353.2 191 88.5
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.3e-95 353.2 195 86.7
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.3e-95 353.2 196 87.2
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.7e-95 352.8 196 86.7
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.7e-95 352.8 196 86.7
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.7e-95 352.8 196 85.2
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 2.2e-95 352.4 195 86.7
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 2.9e-95 352.1 191 88.0
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 3.7e-95 351.7 191 88.0
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 3.7e-95 351.7 193 87.6
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 3.7e-95 351.7 196 86.2
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 6.4e-95 350.9 189 88.4
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 6.4e-95 350.9 196 86.2
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 6.4e-95 350.9 195 86.7
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 8.3e-95 350.5 195 87.2
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.1e-94 350.1 194 87.1
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.9e-94 349.4 191 86.9
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.9e-94 349.4 191 86.9
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 3.2e-94 348.6 194 86.6
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 3.2e-94 348.6 186 89.8
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 4.1e-94 348.2 196 85.7
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 4.1e-94 348.2 196 85.7
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 7.0e-94 347.4 196 85.7
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 9.2e-94 347.1 196 84.7
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.2e-93 346.7 196 83.7
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 2.7e-93 345.5 196 83.2
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 6.0e-93 344.4 194 85.6
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 6.0e-93 344.4 195 84.1
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 1.0e-92 343.6 191 86.4
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 1.0e-92 343.6 196 83.7
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 1.3e-92 343.2 186 88.7
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 3.0e-92 342.0 186 89.2
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 3.9e-92 341.7 195 82.1
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.9e-92 341.7 195 83.1
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 5.0e-92 341.3 197 84.3
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 1.1e-91 340.1 188 87.2
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.5e-91 339.7 196 82.7
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.9e-91 339.3 195 82.1
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.9e-91 339.3 186 87.6
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 3.3e-91 338.6 190 83.2
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 4.3e-91 338.2 196 82.1
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 4.3e-91 338.2 184 86.4
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 7.3e-91 337.4 191 83.8
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.2e-90 336.7 190 84.2
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.8e-90 335.5 196 80.6
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 3.6e-90 335.1 195 82.6
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 3.6e-90 335.1 194 82.0
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 4.7e-90 334.7 188 84.0
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 4.7e-90 334.7 190 82.1
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 4.7e-90 334.7 195 81.5
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 1.1e-89 333.6 191 82.2
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 1.1e-89 333.6 240 71.2
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 1.8e-89 332.8 195 81.0
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 1.8e-89 332.8 195 81.0
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 2.3e-89 332.4 188 82.4
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 2.3e-89 332.4 195 81.0
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 2.3e-89 332.4 191 83.2
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.3e-89 332.4 196 80.1
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 4.0e-89 331.6 190 81.6
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 4.0e-89 331.6 190 81.1
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 4.0e-89 331.6 189 82.5
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 5.2e-89 331.3 197 80.2
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 6.8e-89 330.9 190 82.1
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.5e-88 329.7 188 83.0
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 4.4e-88 328.2 188 82.4
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 9.8e-88 327.0 188 81.9
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 9.8e-88 327.0 188 81.9
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 9.8e-88 327.0 188 81.9
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.3e-87 326.6 190 81.6
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.7e-87 326.2 195 80.0
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 5.4e-86 321.2 194 78.9
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.2e-85 320.1 190 81.1
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 1.6e-85 319.7 190 77.9
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 2.1e-85 319.3 190 78.9
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 2.5e-83 312.4 192 78.1
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 2.1e-82 309.3 183 78.7
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 2.1e-82 309.3 187 78.6
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 2.8e-82 308.9 187 80.2
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 2.3e-81 305.8 192 76.6
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 2.3e-81 305.8 192 76.6
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 1.5e-80 303.1 186 76.3
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 2.6e-80 302.4 185 76.2
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 6.0e-77 291.2 160 88.8
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 5.1e-76 288.1 195 71.8
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.9e-75 286.2 140 100.0
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.5e-75 285.8 155 89.0
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.3e-75 285.4 204 72.5
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.6e-74 283.1 153 88.9
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 2.2e-71 272.7 156 82.7
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 1.9e-70 269.6 157 80.9
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.2e-70 268.9 190 68.9
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 5.4e-70 268.1 152 84.2
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 3.5e-69 265.4 191 67.0
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 2.3e-68 262.7 155 82.6
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.6e-66 256.5 138 89.1
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 9.0e-65 250.8 172 75.0
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 3.4e-64 248.8 137 88.3
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 5.8e-64 248.1 136 86.8
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 6.4e-63 244.6 146 79.5
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 3.0e-60 235.7 191 61.8
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 9.6e-59 230.7 140 78.6
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.4e-57 226.1 183 57.9
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.3e-50 203.8 183 55.2
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 1.6e-50 203.4 123 80.5
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 2.6e-48 196.1 135 68.9
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 2.9e-47 192.6 172 54.1
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 1.7e-39 166.8 186 46.2
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 1.2e-32 144.1 78 89.7
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 2.2e-31 139.8 171 46.8
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 8.5e-31 137.9 76 88.2
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.7e-23 113.6 67 79.1
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 2.1e-21 106.7 56 85.7
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 3.0e-20 102.8 91 56.0
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.8e-18 95.5 51 90.2
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 5.3e-17 92.0 78 62.8
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 1.3e-15 87.4 55 78.2
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 5.0e-15 85.5 59 72.9
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.4e-12 77.4 42 83.3


User provided reference genes

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