Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.8e-117 426.0 224 100.0
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 7.0e-106 387.5 203 99.5
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 5.1e-64 248.4 203 66.5
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 7.3e-63 244.6 210 66.7
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 2.1e-62 243.0 207 63.3
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 2.1e-62 243.0 210 66.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 2.8e-62 242.7 203 65.5
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 4.7e-62 241.9 208 65.9
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.1e-61 240.7 219 63.5
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.4e-61 240.4 206 66.5
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.3e-61 239.6 203 64.5
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 3.1e-61 239.2 207 65.2
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 5.2e-61 238.4 213 66.2
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 8.9e-61 237.7 209 65.1
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.5e-60 236.9 203 64.0
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.0e-60 236.5 203 64.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 2.0e-60 236.5 206 66.0
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 2.6e-60 236.1 206 64.6
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.4e-60 235.3 216 61.1
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 5.8e-60 235.0 208 60.6
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 5.8e-60 235.0 218 63.8
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 1.3e-59 233.8 203 64.0
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.3e-59 233.8 184 71.2
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.7e-59 233.4 216 61.1
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.7e-59 233.4 216 61.6
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 6.4e-59 231.5 202 61.9
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 8.4e-59 231.1 216 60.2
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.1e-58 230.7 213 62.0
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.1e-58 230.7 215 59.5
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 3.2e-58 229.2 209 63.6
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 3.2e-58 229.2 209 63.6
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 5.4e-58 228.4 202 61.9
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 5.4e-58 228.4 202 62.4
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 7.1e-58 228.0 203 64.0
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 7.1e-58 228.0 208 62.0
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 9.2e-58 227.6 212 61.3
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 2.1e-57 226.5 203 61.6
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.7e-57 226.1 202 61.9
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 3.5e-57 225.7 206 61.2
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 4.6e-57 225.3 219 58.9
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.0e-56 224.2 215 59.5
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.0e-56 224.2 219 58.4
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.3e-56 223.0 203 62.1
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 3.0e-56 222.6 219 61.6
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 3.0e-56 222.6 211 58.8
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 3.9e-56 222.2 149 77.9
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 6.6e-56 221.5 203 61.1
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 6.6e-56 221.5 224 58.9
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.5e-55 220.3 206 60.7
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 7.3e-55 218.0 206 62.1
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 1.2e-54 217.2 219 56.2
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.1e-53 214.2 221 56.6
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 1.4e-53 213.8 218 58.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 5.2e-53 211.8 227 54.2
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 8.9e-53 211.1 207 58.5
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.5e-52 210.3 207 60.4
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 2.0e-52 209.9 232 52.2
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 4.4e-52 208.8 207 58.0
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 9.9e-52 207.6 221 54.3
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 2.9e-51 206.1 210 57.1
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.8e-51 205.7 217 56.7
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 4.9e-51 205.3 199 60.3
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 8.4e-51 204.5 196 59.2
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.1e-50 204.1 204 56.4
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.1e-50 204.1 226 53.1
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.9e-50 203.4 220 54.5
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 1.9e-50 203.4 213 56.3
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 2.4e-50 203.0 217 56.7
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.6e-49 200.3 264 49.6
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 3.5e-49 199.1 278 49.3
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.7e-48 196.8 217 53.5
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.7e-48 196.8 204 57.8
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.7e-48 196.8 203 55.2
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 3.9e-48 195.7 246 49.2
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 5.6e-47 191.8 206 51.0
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.3e-47 191.4 204 56.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 9.6e-47 191.0 218 52.3
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.8e-46 189.5 115 82.6
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 8.1e-46 188.0 208 56.2
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.1e-45 187.6 203 53.2
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.4e-45 187.2 206 53.4
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 3.1e-45 186.0 206 52.4
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 3.1e-45 186.0 206 52.4
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 4.0e-45 185.7 206 53.4
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 4.0e-45 185.7 207 55.6
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 3.4e-44 182.6 233 48.1
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 9.9e-44 181.0 193 58.0
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 8.4e-43 177.9 203 54.2
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 5.4e-42 175.3 197 52.8
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 8.7e-40 167.9 203 47.8
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 2.1e-38 163.3 220 47.7
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 2.8e-38 162.9 211 45.0
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 8.1e-38 161.4 104 75.0
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 4.5e-36 155.6 203 49.8
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 3.2e-34 149.4 150 56.7
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 6.2e-30 135.2 120 64.2
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 9.0e-29 131.3 132 56.8
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.9e-27 126.3 138 55.8
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.1e-26 121.7 138 54.3
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 2.1e-25 120.2 74 78.4
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 6.3e-22 108.6 206 39.8
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 8.2e-22 108.2 203 37.4
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 1.8e-21 107.1 153 42.5
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 1.4e-18 97.4 65 72.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 1.0e-16 91.3 106 48.1
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 5.1e-16 89.0 55 81.8
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 6.9e-13 78.6 74 48.6
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.5e-12 75.9 47 74.5
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 4.5e-12 75.9 74 47.3
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.6e-09 65.9 95 44.2
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.1e-07 61.2 129 31.0
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 2.0e-07 60.5 151 29.1
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 2.6e-07 60.1 151 29.8
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 2.6e-07 60.1 101 29.7
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 4.4e-07 59.3 129 30.2
TWI56G1135 Tripterygium wilfordii HOM05D005920 ORTHO05D007211 4.4e-07 59.3 126 29.4
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 5.7e-07 58.9 129 29.5
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 5.7e-07 58.9 131 30.5
SMO134G0039 Selaginella moellendorffii HOM05D005920 ORTHO05D007211 5.7e-07 58.9 124 30.6
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 5.7e-07 58.9 129 30.2
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 7.4e-07 58.5 123 27.6
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 2.2e-06 57.0 132 30.3
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 3.7e-06 56.2 144 29.9
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 4.8e-06 55.8 70 45.7
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.8e-06 55.8 129 29.5
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 6.3e-06 55.5 129 28.7


User provided reference genes

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