Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A641T57 Lonicera japonica HOM05D001065 ORTHO05D002020 3.5e-62 241.9 116 100.0
Lj4A636G19 Lonicera japonica HOM05D001065 ORTHO05D002020 1.3e-56 223.4 108 99.1
Lj4C641G7 Lonicera japonica HOM05D001065 ORTHO05D002020 2.2e-56 222.6 107 100.0
CSS0004246 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 2.3e-29 132.9 117 61.5
CSS0047329 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 2.3e-29 132.9 117 61.5
Nn5g28395 Nelumbo nucifera HOM05D001065 ORTHO05D002020 1.5e-28 130.2 120 56.7
Nn5g28410 Nelumbo nucifera HOM05D001065 ORTHO05D002020 1.5e-28 130.2 120 56.7
CSS0034416 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 2.8e-27 125.9 117 55.6
CSS0037838 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 2.8e-27 125.9 117 55.6
QL09p033728 Quercus lobata HOM05D001065 ORTHO05D002020 2.8e-27 125.9 125 56.8
Actinidia21301 Actinidia chinensis HOM05D001065 ORTHO05D002020 6.2e-27 124.8 123 55.3
COL.COLO4_07483 Corchorus olitorius HOM05D001065 ORTHO05D002020 1.4e-26 123.6 110 62.7
vmacro12617 Vaccinium macrocarpon HOM05D001065 ORTHO05D002020 3.1e-26 122.5 127 53.5
Haze_17517 Corylus avellana HOM05D001065 ORTHO05D002020 4.0e-26 122.1 129 55.0
Duzib116G0856 Durio zibethinus HOM05D001065 ORTHO05D002020 1.5e-25 120.2 110 60.0
Eucgr.F03812 Eucalyptus grandis HOM05D001065 ORTHO05D002020 1.5e-25 120.2 125 56.0
Gohir.D05G271100 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.5e-25 120.2 109 59.6
ClCG11G015890 Citrullus lanatus HOM05D001065 ORTHO05D002020 2.0e-25 119.8 129 50.4
Thecc.08G129700 Theobroma cacao HOM05D001065 ORTHO05D002020 2.0e-25 119.8 110 60.0
Gorai.009G284000 Gossypium raimondii HOM05D001065 ORTHO05D002020 3.4e-25 119.0 109 58.7
Nn1g08891 Nelumbo nucifera HOM05D001065 ORTHO05D002020 3.4e-25 119.0 120 55.8
Lalb_Chr08g0241261 Lupinus albus HOM05D001065 ORTHO05D002020 4.4e-25 118.6 120 55.0
Actinidia15228 Actinidia chinensis HOM05D001065 ORTHO05D002020 9.9e-25 117.5 122 54.1
Cpa.g.sc64.124 Carica papaya HOM05D001065 ORTHO05D002020 1.3e-24 117.1 122 54.1
Nitab4.5_0009546g0010 Nicotiana tabacum HOM05D001065 ORTHO05D002020 1.3e-24 117.1 123 51.2
Atru.chr13.1528 Acer truncatum HOM05D001065 ORTHO05D002020 1.7e-24 116.7 125 52.8
Lj7C345G4 Lonicera japonica HOM05D001065 ORTHO05D002020 1.7e-24 116.7 120 50.0
TAR376G1110 Trochodendron aralioides HOM05D001065 ORTHO05D002020 1.7e-24 116.7 112 54.5
AL1G34870 Arabidopsis lyrata HOM05D001065 ORTHO05D002020 2.9e-24 115.9 106 57.5
CsaV3_4G028080 Cucumis sativus L. HOM05D001065 ORTHO05D002020 2.9e-24 115.9 126 50.8
MD00G1041900 Malus domestica HOM05D001065 ORTHO05D002020 2.9e-24 115.9 118 51.7
Sp1g19260 Schrenkiella parvula HOM05D001065 ORTHO05D002020 2.9e-24 115.9 117 53.8
CANSAT25G2087 Cannabis sativa HOM05D001065 ORTHO05D002020 3.7e-24 115.5 125 51.2
DCAR_003565 Daucus carota HOM05D001065 ORTHO05D002020 3.7e-24 115.5 115 57.4
HanXRQChr05g0149021 Helianthus annuus HOM05D001065 ORTHO05D002020 4.9e-24 115.2 119 54.6
Phvul.009G127700 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 4.9e-24 115.2 115 59.1
A06p17790 Brassica napus HOM05D001065 ORTHO05D002020 6.4e-24 114.8 117 54.7
Aa31LG7G5670 Aethionema arabicum HOM05D001065 ORTHO05D002020 8.3e-24 114.4 117 57.3
Lsat_1_v5_gn_6_97621 Lactuca sativa HOM05D001065 ORTHO05D002020 8.3e-24 114.4 119 54.6
Prupe.1G492600 Prunus persica HOM05D001065 ORTHO05D002020 8.3e-24 114.4 118 53.4
BcaC05g26089 Brassica carinata HOM05D001065 ORTHO05D002020 1.1e-23 114.0 117 55.6
C05p20680 Brassica napus HOM05D001065 ORTHO05D002020 1.1e-23 114.0 117 55.6
BolC5t30767H Brassica oleracea HOM05D001065 ORTHO05D002020 1.1e-23 114.0 117 55.6
Glyma.06G115600 Glycine max HOM05D001065 ORTHO05D002020 1.1e-23 114.0 113 54.9
Gohir.A05G269200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.4e-23 113.6 109 57.8
Gorai.005G088500 Gossypium raimondii HOM05D001065 ORTHO05D002020 1.4e-23 113.6 101 57.4
FAN15G3219 Fragaria x ananassa HOM05D001065 ORTHO05D002020 1.9e-23 113.2 120 53.3
Gohir.D02G079200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.9e-23 113.2 113 54.0
Medtr3g088480 Medicago truncatula HOM05D001065 ORTHO05D002020 1.9e-23 113.2 115 54.8
AT1G21700 Arabidopsis thaliana HOM05D001065 ORTHO05D002020 2.4e-23 112.8 107 56.1
FAN24G0753 Fragaria x ananassa HOM05D001065 ORTHO05D002020 2.4e-23 112.8 120 52.5
FAN27G1699 Fragaria x ananassa HOM05D001065 ORTHO05D002020 2.4e-23 112.8 120 52.5
Glyma.04G247200 Glycine max HOM05D001065 ORTHO05D002020 4.1e-23 112.1 115 56.5
Manes.02G166500 Manihot esculenta HOM05D001065 ORTHO05D002020 4.1e-23 112.1 126 50.0
Duzib093G1487 Durio zibethinus HOM05D001065 ORTHO05D002020 5.4e-23 111.7 110 56.4
Lalb_Chr11g0066081 Lupinus albus HOM05D001065 ORTHO05D002020 5.4e-23 111.7 125 51.2
Duzib041G0679 Durio zibethinus HOM05D001065 ORTHO05D002020 7.1e-23 111.3 100 59.0
Thhalv10006819m.g Eutrema salsugineum HOM05D001065 ORTHO05D002020 7.1e-23 111.3 117 53.8
Nitab4.5_0000322g0040 Nicotiana tabacum HOM05D001065 ORTHO05D002020 7.1e-23 111.3 124 50.0
PGR042G2649 Punica granatum HOM05D001065 ORTHO05D002020 9.2e-23 110.9 114 57.9
TAR628G1385 Trochodendron aralioides HOM05D001065 ORTHO05D002020 9.2e-23 110.9 117 52.1
FvH4_2g27500 Fragaria vesca HOM05D001065 ORTHO05D002020 1.2e-22 110.5 120 52.5
BcaB07g32167 Brassica carinata HOM05D001065 ORTHO05D002020 1.6e-22 110.2 117 53.8
Carub.0001s2114 Capsella rubella HOM05D001065 ORTHO05D002020 2.1e-22 109.8 109 53.2
MD00G1030000 Malus domestica HOM05D001065 ORTHO05D002020 2.1e-22 109.8 118 50.0
Sed0027165 Sechium edule HOM05D001065 ORTHO05D002020 2.1e-22 109.8 126 49.2
VMungo1309G1139 Vigna mungo HOM05D001065 ORTHO05D002020 2.1e-22 109.8 115 54.8
CARHR022060 Cardamine hirsuta HOM05D001065 ORTHO05D002020 2.7e-22 109.4 109 54.1
Psat5g086040 Pisum sativum HOM05D001065 ORTHO05D002020 2.7e-22 109.4 117 53.8
Potri.002G080600 Populus trichocarpa HOM05D001065 ORTHO05D002020 3.5e-22 109.0 119 52.1
RcHm_v2.0_Chr6g0296331 Rosa chinensis HOM05D001065 ORTHO05D002020 3.5e-22 109.0 120 50.0
Sed0006418 Sechium edule HOM05D001065 ORTHO05D002020 3.5e-22 109.0 126 49.2
BraA06t24871Z Brassica rapa HOM05D001065 ORTHO05D002020 6.0e-22 108.2 118 53.4
Potri.005G180800 Populus trichocarpa HOM05D001065 ORTHO05D002020 6.0e-22 108.2 119 52.1
Peaxi162Scf00051g01715 Petunia axillaris HOM05D001065 ORTHO05D002020 7.8e-22 107.8 110 52.7
THA.LOC104804988 Tarenaya hassleriana HOM05D001065 ORTHO05D002020 7.8e-22 107.8 114 54.4
TPR.G13468 Trifolium pratense HOM05D001065 ORTHO05D002020 7.8e-22 107.8 117 51.3
Solyc06g060120.3 Solanum lycopersicum HOM05D001065 ORTHO05D002020 1.0e-21 107.5 111 54.1
arahy.Tifrunner.gnm1.ann1.8ZSB7P Arachis hypogaea HOM05D001065 ORTHO05D002020 1.3e-21 107.1 124 50.8
arahy.Tifrunner.gnm1.ann1.D2JSQE Arachis hypogaea HOM05D001065 ORTHO05D002020 1.3e-21 107.1 124 50.8
Manes.18G080000 Manihot esculenta HOM05D001065 ORTHO05D002020 1.7e-21 106.7 124 47.6
Sabra05G0136800 Salix brachista HOM05D001065 ORTHO05D002020 2.3e-21 106.3 123 49.6
BcaB03g12774 Brassica carinata HOM05D001065 ORTHO05D002020 3.0e-21 105.9 115 53.9
BcaC07g39112 Brassica carinata HOM05D001065 ORTHO05D002020 3.0e-21 105.9 119 50.4
Aqoxy6G00265 Aquilegia oxysepala HOM05D001065 ORTHO05D002020 5.1e-21 105.1 111 49.5
Ca_16578_v3 Cicer arietinum L. HOM05D001065 ORTHO05D002020 5.1e-21 105.1 115 52.2
THA.LOC104800230 Tarenaya hassleriana HOM05D001065 ORTHO05D002020 5.1e-21 105.1 120 48.3
Gohir.A02G071900 Gossypium hirsutum HOM05D001065 ORTHO05D002020 6.6e-21 104.8 102 53.9
Sopen06g020240 Solanum pennellii HOM05D001065 ORTHO05D002020 6.6e-21 104.8 111 49.5
Ciclev10000405m.g Citrus clementina HOM05D001065 ORTHO05D002020 1.9e-20 103.2 119 50.4
Glyma.07G231300 Glycine max HOM05D001065 ORTHO05D002020 2.5e-20 102.8 115 52.2
Cc10_g12300 Coffea canephora HOM05D001065 ORTHO05D002020 3.3e-20 102.4 109 52.3
C08p21010 Brassica napus HOM05D001065 ORTHO05D002020 5.6e-20 101.7 120 50.8
BolC8t49738H Brassica oleracea HOM05D001065 ORTHO05D002020 5.6e-20 101.7 120 50.8
TWI34G1002 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 5.6e-20 101.7 126 50.8
ECA246G4266 Erigeron canadensis HOM05D001065 ORTHO05D002020 7.3e-20 101.3 110 47.3
Lj1g0001950 Lotus japonicus HOM05D001065 ORTHO05D002020 7.3e-20 101.3 121 50.4
Migut.N03271 Erythranthe guttata HOM05D001065 ORTHO05D002020 9.5e-20 100.9 120 47.5
Sabra02G0063100 Salix brachista HOM05D001065 ORTHO05D002020 9.5e-20 100.9 111 50.5
CAN.G1282.8 Capsicum annuum HOM05D001065 ORTHO05D002020 2.8e-19 99.4 121 48.8
Hma1.2p1_0542F.1_g174880 Hydrangea macrophylla HOM05D001065 ORTHO05D002020 4.7e-19 98.6 109 56.9
MBI06_g35523_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D002020 6.2e-19 98.2 129 44.2
A08p28850 Brassica napus HOM05D001065 ORTHO05D002020 2.4e-18 96.3 120 49.2
BraA08t34815Z Brassica rapa HOM05D001065 ORTHO05D002020 2.4e-18 96.3 120 48.3
SalBow2G1254 Salvia bowleyana HOM05D001065 ORTHO05D002020 2.4e-18 96.3 118 45.8
TWI60G0950 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 3.1e-18 95.9 126 48.4
Oeu040406.1 Olea europaea HOM05D001065 ORTHO05D002020 4.0e-18 95.5 124 42.7
PSO170G0954 Papaver somniferum HOM05D001065 ORTHO05D002020 4.0e-18 95.5 126 46.0
MSTRG.22404 Avicennia marina HOM05D001065 ORTHO05D002020 5.2e-18 95.1 118 44.9
CDE06G1933 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 6.8e-18 94.7 125 41.6
CiPaw.16G025500 Carya illinoinensis HOM05D001065 ORTHO05D002020 8.9e-18 94.4 128 45.3
Glyma.13G031300 Glycine max HOM05D001065 ORTHO05D002020 1.2e-17 94.0 103 52.4
SGA_v2.0_scaffold24G10435 Striga asiatica HOM05D001065 ORTHO05D002020 1.2e-17 94.0 110 50.9
PSO528G0199 Papaver somniferum HOM05D001065 ORTHO05D002020 3.4e-17 92.4 126 45.2
Glyma.14G153000 Glycine max HOM05D001065 ORTHO05D002020 9.9e-17 90.9 108 50.0
Phvul.001G071900 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 9.9e-17 90.9 107 50.5
unitig_8.g3348 Utricularia gibba HOM05D001065 ORTHO05D002020 1.3e-16 90.5 114 44.7
SGA_v2.0_scaffold28G11985 Striga asiatica HOM05D001065 ORTHO05D002020 2.2e-16 89.7 117 43.6
VMungo0647G1964 Vigna mungo HOM05D001065 ORTHO05D002020 2.9e-16 89.4 106 50.0
unitig_22.g6738 Utricularia gibba HOM05D001065 ORTHO05D002020 2.4e-15 86.3 114 46.5
HPP92_009276 Vanilla planifolia HOM05D001065 ORTHO05D002020 3.2e-15 85.9 109 46.8
Os11g0183700 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D002020 4.2e-15 85.5 115 43.5
CsaV3_UNG115960 Cucumis sativus L. HOM05D001065 ORTHO05D002020 5.4e-15 85.1 85 54.1
EL10Ac1g00003 Beta vulgaris HOM05D001065 ORTHO05D002020 1.2e-14 84.0 113 45.1
AUR62043124 Chenopodium quinoa HOM05D001065 ORTHO05D002020 3.5e-14 82.4 107 46.7
Oeu055291.1 Olea europaea HOM05D001065 ORTHO05D002020 3.5e-14 82.4 115 43.5
Zm00001eb201260 Zea mays HOM05D001065 ORTHO05D002020 6.0e-14 81.6 113 43.4
ATR0994G009 Amborella trichopoda HOM05D001065 ORTHO05D002020 3.0e-13 79.3 123 38.2
Cfa018563 Carpinus fangiana HOM05D001065 ORTHO05D002020 5.1e-13 78.6 106 46.2
Zm00001eb138850 Zea mays HOM05D001065 ORTHO05D002020 1.5e-12 77.0 117 39.3
Rhsim06G0088100 Rhododendron simsii HOM05D001065 ORTHO05D002020 3.3e-12 75.9 112 44.6
AUR62020263 Chenopodium quinoa HOM05D001065 ORTHO05D002020 4.3e-12 75.5 109 43.1
AUR62023537 Chenopodium quinoa HOM05D001065 ORTHO05D002020 5.6e-12 75.1 110 41.8
Os12g0176700 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D002020 5.2e-10 68.6 112 36.6
Dinv27281 Davidia involucrata HOM05D001065 ORTHO05D002020 5.8e-09 65.1 37 70.3
GSVIVG01008831001 Vitis vinifera HOM05D001065 ORTHO05D002020 9.9e-09 64.3 67 49.3
CDE08G0267 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 1.3e-08 63.9 106 34.0


User provided reference genes

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