Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A625G9 Lonicera japonica HOM05D005920 ORTHO05D007211 6.3e-64 247.3 125 100.0
Dinv07224 Davidia involucrata HOM05D005920 ORTHO05D007211 7.0e-23 110.9 89 68.5
Hma1.2p1_0186F.1_g081770 Hydrangea macrophylla HOM05D005920 ORTHO05D007211 6.6e-21 104.4 77 74.0
TAR376G1095 Trochodendron aralioides HOM05D005920 ORTHO05D007211 4.0e-18 95.1 89 60.7
TWI56G1135 Tripterygium wilfordii HOM05D005920 ORTHO05D007211 2.6e-17 92.4 79 62.0
CSS0013202 Camellia sinensis var. sinensis HOM05D005920 ORTHO05D007211 4.4e-17 91.7 77 66.2
CiPaw.06G030600 Carya illinoinensis HOM05D005920 ORTHO05D007211 1.3e-16 90.1 75 64.0
Thecc.08G124700 Theobroma cacao HOM05D005920 ORTHO05D007211 1.3e-16 90.1 76 61.8
Actinidia29463 Actinidia chinensis HOM05D005920 ORTHO05D007211 1.7e-16 89.7 79 63.3
Gohir.D06G045000 Gossypium hirsutum HOM05D005920 ORTHO05D007211 1.9e-15 86.3 76 60.5
Gorai.010G050100 Gossypium raimondii HOM05D005920 ORTHO05D007211 1.9e-15 86.3 76 60.5
vmacro00831 Vaccinium macrocarpon HOM05D005920 ORTHO05D007211 2.4e-15 85.9 79 62.0
Duzib093G1431 Durio zibethinus HOM05D005920 ORTHO05D007211 3.2e-15 85.5 74 62.2
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 2.1e-14 82.8 77 59.7
Prupe.1G499100 Prunus persica HOM05D005920 ORTHO05D007211 2.1e-14 82.8 79 59.5
QL09p034934 Quercus lobata HOM05D005920 ORTHO05D007211 2.1e-14 82.8 79 55.7
Gohir.A06G044066 Gossypium hirsutum HOM05D005920 ORTHO05D007211 4.6e-14 81.6 76 57.9
Gorai.009G245500 Gossypium raimondii HOM05D005920 ORTHO05D007211 4.6e-14 81.6 76 57.9
Nn1g08776 Nelumbo nucifera HOM05D005920 ORTHO05D007211 4.6e-14 81.6 89 51.7
Nn1g08784 Nelumbo nucifera HOM05D005920 ORTHO05D007211 4.6e-14 81.6 89 51.7
Gohir.D05G237100 Gossypium hirsutum HOM05D005920 ORTHO05D007211 6.0e-14 81.3 76 56.6
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 1.0e-13 80.5 76 56.6
Nitab4.5_0001273g0050 Nicotiana tabacum HOM05D005920 ORTHO05D007211 1.0e-13 80.5 86 53.5
CAN.G127.17 Capsicum annuum HOM05D005920 ORTHO05D007211 5.1e-13 78.2 89 53.9
Solyc11g012900.3 Solanum lycopersicum HOM05D005920 ORTHO05D007211 1.9e-12 76.3 79 57.0
Aa31LG9G14240 Aethionema arabicum HOM05D005920 ORTHO05D007211 5.6e-12 74.7 73 54.8
Sopen11g007640 Solanum pennellii HOM05D005920 ORTHO05D007211 9.5e-12 73.9 79 55.7
Atru.chr13.1453_Atru.chr13.1454 Acer truncatum HOM05D005920 ORTHO05D007211 1.2e-11 73.6 76 53.9
Atru.chr13.1476_Atru.chr13.1477 Acer truncatum HOM05D005920 ORTHO05D007211 1.2e-11 73.6 76 53.9
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 1.2e-11 73.6 76 47.4
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 1.2e-11 73.6 75 53.3
Potri.005G177400 Populus trichocarpa HOM05D005920 ORTHO05D007211 2.1e-11 72.8 78 47.4
COL.COLO4_35924 Corchorus olitorius HOM05D005920 ORTHO05D007211 2.8e-11 72.4 72 54.2
Eucgr.F03788 Eucalyptus grandis HOM05D005920 ORTHO05D007211 2.8e-11 72.4 85 44.7
Nitab4.5_0001803g0120 Nicotiana tabacum HOM05D005920 ORTHO05D007211 4.7e-11 71.6 75 54.7
Hund26813 Selenicereus undatus HOM05D005920 ORTHO05D007211 6.2e-11 71.2 76 55.3
PSO528G0030 Papaver somniferum HOM05D005920 ORTHO05D007211 8.1e-11 70.9 88 47.7
VMungo0647G0482 Vigna mungo HOM05D005920 ORTHO05D007211 8.1e-11 70.9 78 48.7
CANSAT25G3381 Cannabis sativa HOM05D005920 ORTHO05D007211 1.1e-10 70.5 80 51.2
AUR62019083 Chenopodium quinoa HOM05D005920 ORTHO05D007211 1.1e-10 70.5 64 54.7
Sc02g0006050 Simmondsia chinensis HOM05D005920 ORTHO05D007211 1.4e-10 70.1 103 41.7
AUR62014341 Chenopodium quinoa HOM05D005920 ORTHO05D007211 1.8e-10 69.7 62 56.5
MD15G1349900 Malus domestica HOM05D005920 ORTHO05D007211 1.8e-10 69.7 97 45.4
Cc10_g11840 Coffea canephora HOM05D005920 ORTHO05D007211 2.3e-10 69.3 79 53.2
Manes.18G076800 Manihot esculenta HOM05D005920 ORTHO05D007211 2.3e-10 69.3 80 50.0
DCAR_014089 Daucus carota HOM05D005920 ORTHO05D007211 3.1e-10 68.9 75 56.0
RcHm_v2.0_Chr6g0295691 Rosa chinensis HOM05D005920 ORTHO05D007211 3.1e-10 68.9 76 51.3
EL10Ac1g01005 Beta vulgaris HOM05D005920 ORTHO05D007211 5.2e-10 68.2 77 49.4
HPP92_011946 Vanilla planifolia HOM05D005920 ORTHO05D007211 5.2e-10 68.2 78 46.2
Glyma.14G149300 Glycine max HOM05D005920 ORTHO05D007211 6.8e-10 67.8 77 49.4
Psat6g041000 Pisum sativum HOM05D005920 ORTHO05D007211 8.9e-10 67.4 78 51.3
SalBow7G4584 Salvia bowleyana HOM05D000555 ORTHO05D007211 1.2e-09 67.0 78 52.6
Glyma.13G080100 Glycine max HOM05D005920 ORTHO05D007211 2.0e-09 66.2 78 47.4
Migut.C01133 Erythranthe guttata HOM05D005920 ORTHO05D007211 5.8e-09 64.7 83 51.8
Lalb_Chr10g0101741 Lupinus albus HOM05D005920 ORTHO05D007211 7.5e-09 64.3 79 44.3
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 1.3e-08 63.5 77 46.8
Aqoxy6G00210 Aquilegia oxysepala HOM05D005920 ORTHO05D007211 1.7e-08 63.2 59 57.6
FAN27G1284 Fragaria x ananassa HOM05D005920 ORTHO05D007211 1.7e-08 63.2 82 46.3
Lj1g0027048 Lotus japonicus HOM05D005920 ORTHO05D007211 1.7e-08 63.2 76 50.0
FvH4_2g26840 Fragaria vesca HOM05D005920 ORTHO05D007211 2.2e-08 62.8 80 48.8
Medtr1g030300 Medicago truncatula HOM05D005920 ORTHO05D007211 2.2e-08 62.8 77 51.9
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 3.7e-08 62.0 48 66.7
A02p26870 Brassica napus HOM05D005920 ORTHO05D007211 3.7e-08 62.0 48 66.7
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 3.7e-08 62.0 48 66.7
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 3.7e-08 62.0 48 66.7
BraA02t07698Z Brassica rapa HOM05D005920 ORTHO05D007211 3.7e-08 62.0 48 66.7
SGA_v2.0_scaffold24G10464 Striga asiatica HOM05D005920 ORTHO05D007211 3.7e-08 62.0 82 45.1
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 4.9e-08 61.6 56 58.9
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 4.9e-08 61.6 60 55.0
Thhalv10028662m.g Eutrema salsugineum HOM05D005920 ORTHO05D007211 8.3e-08 60.8 77 48.1
Oeu017295.1 Olea europaea HOM05D005920 ORTHO05D007211 8.3e-08 60.8 83 45.8
arahy.Tifrunner.gnm1.ann1.QU4SLQ Arachis hypogaea HOM05D005920 ORTHO05D007211 1.1e-07 60.5 56 53.6
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 1.4e-07 60.1 56 55.4
arahy.Tifrunner.gnm1.ann1.GZGN8Y Arachis hypogaea HOM05D005920 ORTHO05D007211 1.4e-07 60.1 57 56.1
FAN20G1415 Fragaria x ananassa HOM05D005920 ORTHO05D007211 1.4e-07 60.1 81 44.4
Phvul.008G163200 Phaseolus vulgaris HOM05D005920 ORTHO05D007211 1.4e-07 60.1 58 50.0
MSTRG.1445 Avicennia marina HOM05D005920 ORTHO05D007211 1.9e-07 59.7 82 47.6
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 1.9e-07 59.7 64 51.6
Zm00001eb076340 Zea mays HOM05D005920 ORTHO05D007211 3.2e-07 58.9 74 40.5
ATR0584G080 Amborella trichopoda HOM05D005920 ORTHO05D007211 4.1e-07 58.5 54 53.7
ClCG11G015770 Citrullus lanatus HOM05D005920 ORTHO05D007211 4.1e-07 58.5 59 50.8
FAN24G1536 Fragaria x ananassa HOM05D005920 ORTHO05D007211 4.1e-07 58.5 81 45.7
TPR.G25796 Trifolium pratense HOM05D005920 ORTHO05D007211 7.1e-07 57.8 79 44.3
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 1.6e-06 56.6 88 45.5
Lsat_1_v5_gn_6_112921 Lactuca sativa HOM05D005920 ORTHO05D007211 4.6e-06 55.1 74 45.9
MELO3C010480.2 Cucumis melo HOM05D005920 ORTHO05D007211 6.0e-06 54.7 59 47.5
CsaV3_4G028230 Cucumis sativus L. HOM05D005920 ORTHO05D007211 7.8e-06 54.3 59 47.5
Sed0014256 Sechium edule HOM05D005920 ORTHO05D007211 7.8e-06 54.3 64 46.9


User provided reference genes

Program Settings