Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A624T17 Lonicera japonica HOM05D000555 ORTHO05D029891 4.5e-144 514.6 264 100.0
Dinv27321 Davidia involucrata HOM05D000555 ORTHO05D001906 1.5e-43 180.6 252 45.2
Actinidia21320 Actinidia chinensis HOM05D000555 ORTHO05D001906 2.0e-35 153.7 254 40.6
Rhsim06G0104100 Rhododendron simsii HOM05D000555 ORTHO05D001906 2.9e-34 149.8 246 38.6
CSS0047814 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 1.3e-29 134.4 217 41.5
Dinv07225 Davidia involucrata HOM05D000555 ORTHO05D001906 2.2e-26 123.6 163 47.9
TAR381G0759 Trochodendron aralioides HOM05D000555 ORTHO05D001906 3.8e-26 122.9 268 33.6
GSVIVG01008876001 Vitis vinifera HOM05D000555 ORTHO05D001906 2.7e-24 116.7 252 34.9
Nn5g28268 Nelumbo nucifera HOM05D000555 ORTHO05D001906 1.4e-17 94.4 199 34.2
Aqoxy6G00208 Aquilegia oxysepala HOM05D000555 ORTHO05D001906 9.3e-17 91.7 236 33.1
MBI09_g12164_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 3.0e-15 86.7 236 31.8
CANSAT11G2461 Cannabis sativa HOM05D000555 ORTHO05D001906 5.1e-15 85.9 180 35.0
Prupe.1G499400 Prunus persica HOM05D000555 ORTHO05D001906 5.1e-15 85.9 197 35.0
Duzib093G1130 Durio zibethinus HOM05D000555 ORTHO05D001906 6.7e-15 85.5 231 31.6
Manes.18G076700 Manihot esculenta HOM05D000555 ORTHO05D001906 6.7e-15 85.5 244 31.6
QL09p034959 Quercus lobata HOM05D000555 ORTHO05D001906 8.2e-13 78.6 184 36.4
Thecc.08G124600 Theobroma cacao HOM05D000555 ORTHO05D001906 8.2e-13 78.6 217 30.9
Gohir.D01G180700 Gossypium hirsutum HOM05D000555 ORTHO05D001906 1.8e-12 77.4 93 45.2
Gorai.002G221900 Gossypium raimondii HOM05D000555 ORTHO05D001906 4.1e-12 76.3 93 44.1
PSO528G0268 Papaver somniferum HOM05D000555 ORTHO05D001906 5.3e-12 75.9 186 31.2
MD15G1350300 Malus domestica HOM05D000555 ORTHO05D001906 1.2e-11 74.7 133 36.8
PSO170G2163 Papaver somniferum HOM05D000555 ORTHO05D001906 1.5e-11 74.3 184 31.0
Solyc06g060380.3 Solanum lycopersicum HOM05D000555 ORTHO05D001906 2.0e-11 73.9 172 33.1
Gorai.005G217000 Gossypium raimondii HOM05D000555 ORTHO05D029891 4.5e-11 72.8 104 39.4
AT1G77600 Arabidopsis thaliana HOM05D000555 ORTHO05D001906 5.9e-11 72.4 121 36.4
Carub.0002s2449 Capsella rubella HOM05D000555 ORTHO05D001906 5.9e-11 72.4 101 41.6
Duzib116G0370 Durio zibethinus HOM05D000555 ORTHO05D001906 5.9e-11 72.4 72 47.2
Sopen06g020520 Solanum pennellii HOM05D000555 ORTHO05D001906 5.9e-11 72.4 172 32.6
Sp5g32750 Schrenkiella parvula HOM05D000555 ORTHO05D001906 7.6e-11 72.0 136 35.3
DCAR_003549 Daucus carota HOM05D000555 ORTHO05D001906 1.3e-10 71.2 101 48.5
Thhalv10018009m.g Eutrema salsugineum HOM05D000555 ORTHO05D001906 2.2e-10 70.5 81 45.7
C02p34810 Brassica napus HOM05D000555 ORTHO05D001906 3.8e-10 69.7 81 44.4
CARHR071110 Cardamine hirsuta HOM05D000555 ORTHO05D001906 3.8e-10 69.7 122 36.9
Nitab4.5_0000633g0190 Nicotiana tabacum HOM05D000555 ORTHO05D001906 3.8e-10 69.7 173 33.5
Aa31LG4G7710 Aethionema arabicum HOM05D000555 ORTHO05D001906 5.0e-10 69.3 127 37.0
BcaC03g15748 Brassica carinata HOM05D000555 ORTHO05D001906 5.0e-10 69.3 81 44.4
A02p21430 Brassica napus HOM05D000555 ORTHO05D001906 5.0e-10 69.3 81 44.4
BolC2t09500H Brassica oleracea HOM05D000555 ORTHO05D001906 5.0e-10 69.3 81 44.4
BraA02t07153Z Brassica rapa HOM05D000555 ORTHO05D001906 5.0e-10 69.3 81 44.4
AL2G37810 Arabidopsis lyrata HOM05D000555 ORTHO05D001906 8.5e-10 68.6 66 50.0
SGA_v2.0_scaffold52G18968 Striga asiatica HOM05D000555 ORTHO05D001906 8.5e-10 68.6 170 28.8
Gohir.D02G194150 Gossypium hirsutum HOM05D000555 ORTHO05D029891 1.1e-09 68.2 104 38.5
BcaB05g25062 Brassica carinata HOM05D000555 ORTHO05D001906 1.4e-09 67.8 66 51.5
Lj4g0005227 Lotus japonicus HOM05D000555 ORTHO05D001906 3.2e-09 66.6 194 30.4
COL.COLO4_35931 Corchorus olitorius HOM05D000555 ORTHO05D001906 2.7e-08 63.5 263 26.6
SGA_v2.0_scaffold7G03693 Striga asiatica HOM05D000555 ORTHO05D001906 6.1e-08 62.4 205 26.3
Ca_00764_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 1.8e-07 60.8 129 32.6
Cpa.g.sc27.226 Carica papaya HOM05D000555 ORTHO05D001906 2.3e-07 60.5 106 33.0
Migut.H01632 Erythranthe guttata HOM05D000555 ORTHO05D001906 2.3e-07 60.5 81 37.0
Medtr2g027090 Medicago truncatula HOM05D000555 ORTHO05D001906 2.3e-07 60.5 129 31.0
Nn1g07523 Nelumbo nucifera HOM05D000555 ORTHO05D001906 2.3e-07 60.5 182 28.0
Atru.chr13.1457 Acer truncatum HOM05D000555 ORTHO05D001906 3.0e-07 60.1 189 30.2
Atru.chr13.1479 Acer truncatum HOM05D000555 ORTHO05D001906 3.9e-07 59.7 243 29.2
ECA248G1369 Erigeron canadensis HOM05D000555 ORTHO05D001906 5.1e-07 59.3 95 30.5
Glyma.15G120300 Glycine max HOM05D000555 ORTHO05D001906 5.1e-07 59.3 64 45.3
MD08G1163400 Malus domestica HOM05D000555 ORTHO05D001906 6.7e-07 58.9 188 32.4
Glyma.09G014600 Glycine max HOM05D000555 ORTHO05D001906 8.7e-07 58.5 66 42.4
Gohir.D06G103000 Gossypium hirsutum HOM05D000555 ORTHO05D000646 8.7e-07 58.5 66 30.3
PSO210G1034 Papaver somniferum HOM05D000555 ORTHO05D001906 8.7e-07 58.5 66 39.4
Psat1g172440 Pisum sativum HOM05D000555 ORTHO05D001906 8.7e-07 58.5 162 26.5
Ca_20991_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 1.9e-06 57.4 203 28.6
Cc09_g00310 Coffea canephora HOM05D000555 ORTHO05D001906 1.9e-06 57.4 76 38.2
Lj3g0003571 Lotus japonicus HOM05D000555 ORTHO05D000646 2.5e-06 57.0 142 26.1
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 2.5e-06 57.0 146 33.6
arahy.Tifrunner.gnm1.ann1.M87LIL Arachis hypogaea HOM05D000555 ORTHO05D001906 3.3e-06 56.6 136 31.6
Lalb_Chr18g0057351 Lupinus albus HOM05D000555 ORTHO05D001906 3.3e-06 56.6 123 30.1
Migut.M01445 Erythranthe guttata HOM05D000555 ORTHO05D001906 4.3e-06 56.2 132 28.8
Medtr4g006875 Medicago truncatula HOM05D000555 ORTHO05D000646 4.3e-06 56.2 162 27.2
Oeu044433.1 Olea europaea HOM05D000555 ORTHO05D001906 4.3e-06 56.2 78 37.2
TPR.G5976 Trifolium pratense HOM05D000555 ORTHO05D001906 4.3e-06 56.2 67 38.8
Zm00001eb280900 Zea mays HOM05D000555 ORTHO05D001906 4.3e-06 56.2 191 26.7
A03p04800 Brassica napus HOM05D000555 ORTHO05D000646 5.7e-06 55.8 76 28.9
BraA03t09820Z Brassica rapa HOM05D000555 ORTHO05D000646 5.7e-06 55.8 76 28.9
Glyma.07G268200 Glycine max HOM05D000555 ORTHO05D001906 5.7e-06 55.8 130 31.5
Gorai.010G118000 Gossypium raimondii HOM05D000555 ORTHO05D000646 5.7e-06 55.8 132 28.0
Lj3g0004040 Lotus japonicus HOM05D000555 ORTHO05D000646 5.7e-06 55.8 93 31.2
Lj3g0024067 Lotus japonicus HOM05D000555 ORTHO05D000646 7.4e-06 55.5 93 31.2
SalBow4G0223 Salvia bowleyana HOM05D000555 ORTHO05D000646 7.4e-06 55.5 108 25.9
Zm00001eb078170 Zea mays HOM05D000555 ORTHO05D000646 7.4e-06 55.5 105 29.5
Aqoxy1G02801 Aquilegia oxysepala HOM05D000555 ORTHO05D001906 9.7e-06 55.1 115 33.0
arahy.Tifrunner.gnm1.ann1.AVE6NE Arachis hypogaea HOM05D000555 ORTHO05D001906 9.7e-06 55.1 160 29.4
Gorai.010G248500 Gossypium raimondii HOM05D000555 ORTHO05D001906 9.7e-06 55.1 124 27.4
MBI15_g03489_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 9.7e-06 55.1 125 29.6
Peaxi162Scf00051g00732 Petunia axillaris HOM05D000555 ORTHO05D001906 9.7e-06 55.1 195 29.2


User provided reference genes

Program Settings