Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A614G14 Lonicera japonica HOM05D007560 ORTHO05D005947 7.6e-55 216.9 105 100.0
Lj8C356T1 Lonicera japonica HOM05D007560 ORTHO05D005947 8.2e-41 170.2 96 86.5
Lj6C390T13 Lonicera japonica HOM05D007560 ORTHO05D005947 5.3e-32 141.0 85 77.6
Lj8P356T28 Lonicera japonica HOM05D007560 ORTHO05D005947 2.9e-30 135.2 79 84.8
Lj6C626T9 Lonicera japonica HOM05D007560 ORTHO05D005947 1.7e-25 119.4 65 87.7
Lj5C336T5 Lonicera japonica HOM05D007560 ORTHO05D005947 1.1e-24 116.7 88 65.9
Lj8C38T12 Lonicera japonica HOM05D007560 ORTHO05D005947 2.2e-22 109.0 88 59.1
Lj5C338T12 Lonicera japonica HOM05D007560 ORTHO05D005947 8.8e-19 97.1 88 58.0
Lj5C336T6 Lonicera japonica HOM05D007560 ORTHO05D005947 1.5e-18 96.3 87 56.3
Lj5C338T9 Lonicera japonica HOM05D007560 ORTHO05D005947 7.5e-18 94.0 103 48.5
Lj5E336G0 Lonicera japonica HOM05D007560 ORTHO05D005947 7.5e-18 94.0 87 55.2
Lj5C321T2 Lonicera japonica HOM05D007560 ORTHO05D005947 1.1e-16 90.1 69 62.3
Lj5C338T11 Lonicera japonica HOM05D007560 ORTHO05D005947 3.8e-14 81.6 68 54.4
Lj5C336G7 Lonicera japonica HOM05D007560 ORTHO05D005947 5.0e-14 81.3 77 55.8
Rhsim11G0104100 Rhododendron simsii HOM05D007560 ORTHO05D005947 5.0e-14 81.3 76 55.3
Rhsim11G0104000 Rhododendron simsii HOM05D007560 ORTHO05D005947 8.5e-14 80.5 76 55.3
Rhsim11G0103500 Rhododendron simsii HOM05D007560 ORTHO05D005947 1.1e-13 80.1 76 53.9
Dinv30955 Davidia involucrata HOM05D008691 ORTHO05D005947 1.5e-13 79.7 55 61.8
Rhsim11G0104400 Rhododendron simsii HOM05D007560 ORTHO05D005947 1.2e-12 76.6 59 59.3
Lj5P358T14 Lonicera japonica HOM05D007560 ORTHO05D005947 2.7e-12 75.5 70 52.9
Lj5C320G6 Lonicera japonica HOM05D007560 ORTHO05D005947 3.6e-12 75.1 85 43.5
Rhsim11G0104200 Rhododendron simsii HOM05D007560 ORTHO05D005947 3.6e-12 75.1 55 65.5
CSS0008666 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 1.0e-11 73.6 83 49.4
CSS0014327 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 1.0e-11 73.6 83 49.4
CSS0006449 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 1.4e-11 73.2 63 54.0
CSS0008734 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 6.8e-11 70.9 83 48.2
Rhsim11G0103400 Rhododendron simsii HOM05D007560 ORTHO05D005947 2.6e-10 68.9 53 62.3
CSS0006319 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 5.7e-10 67.8 57 56.1
Nitab4.5_0001737g0020 Nicotiana tabacum HOM05D007560 ORTHO05D005947 4.9e-09 64.7 96 37.5
Aqoxy2G03979 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 2.4e-08 62.4 62 50.0
Lj5C336T3 Lonicera japonica HOM05D007560 ORTHO05D005947 3.1e-08 62.0 81 48.1
Peaxi162Scf00058g00156 Petunia axillaris HOM05D007560 ORTHO05D005947 3.1e-08 62.0 58 55.2
Actinidia16912 Actinidia chinensis HOM05D025535 ORTHO05D023259 2.0e-07 59.3 54 51.9
COL.COLO4_32922 Corchorus olitorius HOM05D007560 ORTHO05D005947 3.5e-07 58.5 61 49.2
TAR381G1454 Trochodendron aralioides HOM05D000007 ORTHO05D000521 3.5e-07 58.5 53 49.1
HanXRQChr10g0295591 Helianthus annuus HOM05D000007 ORTHO05D000521 5.9e-07 57.8 45 51.1
PSO210G3980 Papaver somniferum HOM05D000007 ORTHO05D000676 1.0e-06 57.0 45 55.6
RcHm_v2.0_Chr5g0061011 Rosa chinensis HOM05D000007 ORTHO05D000017 1.0e-06 57.0 44 59.1
Hund19676 Selenicereus undatus HOM05D007560 ORTHO05D005947 1.3e-06 56.6 58 44.8
Aqoxy5G01432 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 1.7e-06 56.2 56 48.2
FvH4_6g39180 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-06 56.2 57 49.1
FAN14G0847 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-06 56.2 57 49.1
FAN19G0727 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-06 56.2 72 40.3
FAN28G0255 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-06 56.2 72 40.3
Peaxi162Scf00153g00103 Petunia axillaris HOM05D007560 ORTHO05D005947 1.7e-06 56.2 71 49.3
Potri.001G224200 Populus trichocarpa HOM05D000007 ORTHO05D000521 1.7e-06 56.2 61 42.6
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-06 56.2 44 61.4
Sabra08G0155200 Salix brachista HOM05D000007 ORTHO05D000521 1.7e-06 56.2 56 44.6
Thecc.04G197200 Theobroma cacao HOM05D000007 ORTHO05D000017 1.7e-06 56.2 48 52.1
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.7e-06 56.2 56 46.4
Gohir.A07G189800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 2.3e-06 55.8 69 40.6
Nitab4.5_0001634g0020 Nicotiana tabacum HOM05D007560 ORTHO05D005947 2.3e-06 55.8 64 50.0
vmacro09383 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 2.3e-06 55.8 41 58.5
FvH4_1g03001 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-06 55.5 46 52.2
Peaxi162Scf00001g04112 Petunia axillaris HOM05D000007 ORTHO05D013549 2.9e-06 55.5 50 48.0
TAR624G0295 Trochodendron aralioides HOM05D000007 ORTHO05D000521 2.9e-06 55.5 62 40.3
FvH4_6g40001 Fragaria vesca HOM05D000007 ORTHO05D000017 3.8e-06 55.1 78 42.3
FAN26G1796 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.8e-06 55.1 46 50.0
Lj8A0T14 Lonicera japonica HOM05D000007 ORTHO05D000521 3.8e-06 55.1 48 47.9
Nn1g02068 Nelumbo nucifera HOM05D000007 ORTHO05D000017 3.8e-06 55.1 56 46.4
Potri.004G000900 Populus trichocarpa HOM05D000007 ORTHO05D000521 3.8e-06 55.1 68 42.6
arahy.Tifrunner.gnm1.ann1.AKW0RV Arachis hypogaea HOM05D000007 ORTHO05D000017 5.0e-06 54.7 59 50.8
arahy.Tifrunner.gnm1.ann1.VC4IMW Arachis hypogaea HOM05D000007 ORTHO05D000017 5.0e-06 54.7 72 38.9
DCAR_004301 Daucus carota HOM05D000007 ORTHO05D000521 5.0e-06 54.7 45 48.9
FAN02G3460 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.0e-06 54.7 57 49.1
RcHm_v2.0_Chr2g0154621 Rosa chinensis HOM05D000007 ORTHO05D011565 5.0e-06 54.7 71 40.8
vmacro19993 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 5.0e-06 54.7 46 54.3
HanXRQChr03g0076041 Helianthus annuus HOM05D000007 ORTHO05D000676 6.6e-06 54.3 57 40.4
PSO210G7404 Papaver somniferum HOM05D000007 ORTHO05D000676 6.6e-06 54.3 47 51.1
Aqoxy6G01336 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 8.6e-06 53.9 61 45.9
Aqoxy7G01380 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 8.6e-06 53.9 57 47.4
ECA240G0379 Erigeron canadensis HOM05D000007 ORTHO05D000017 8.6e-06 53.9 63 38.1
FvH4_3g40660 Fragaria vesca HOM05D000007 ORTHO05D000017 8.6e-06 53.9 62 41.9
FAN11G2499 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.6e-06 53.9 62 41.9
FAN16G2717 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.6e-06 53.9 45 55.6
FAN16G3614 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.6e-06 53.9 62 41.9
PSO210G0639 Papaver somniferum HOM05D000007 ORTHO05D000676 8.6e-06 53.9 47 51.1
RcHm_v2.0_Chr2g0153011 Rosa chinensis HOM05D000007 ORTHO05D000017 8.6e-06 53.9 48 54.2
TAR624G0325 Trochodendron aralioides HOM05D000007 ORTHO05D000017 8.6e-06 53.9 51 49.0
vmacro12514 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 8.6e-06 53.9 49 51.0


User provided reference genes

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