Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A601T6 Lonicera japonica HOM05D004443 ORTHO05D005421 3.7e-101 371.7 208 100.0
Lj4A595T22 Lonicera japonica HOM05D004443 ORTHO05D005421 1.6e-72 276.6 163 97.5
Dinv07918 Davidia involucrata HOM05D004443 ORTHO05D005421 4.4e-38 162.2 166 60.8
CSS0038352 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 6.4e-29 131.7 169 57.4
CSS0010818 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 1.9e-28 130.2 169 57.4
Actinidia29443 Actinidia chinensis HOM05D004443 ORTHO05D005421 1.3e-26 124.0 171 53.8
CiPaw.05G227100 Carya illinoinensis HOM05D004443 ORTHO05D005421 1.3e-26 124.0 166 47.6
Haze_00499 Corylus avellana HOM05D004443 ORTHO05D005421 3.0e-26 122.9 166 49.4
Oeu030035.2 Olea europaea HOM05D004443 ORTHO05D005421 5.1e-26 122.1 168 50.6
Cfa015975 Carpinus fangiana HOM05D004443 ORTHO05D005421 3.3e-25 119.4 174 48.9
vmacro12543 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 2.1e-24 116.7 157 54.8
SGA_v2.0_scaffold52G19007 Striga asiatica HOM05D004443 ORTHO05D005421 1.1e-23 114.4 168 51.8
QL09p036005 Quercus lobata HOM05D004443 ORTHO05D005421 5.3e-23 112.1 111 55.9
Ciclev10000257m.g Citrus clementina HOM05D004443 ORTHO05D005421 2.0e-22 110.2 164 52.4
Migut.C01174 Erythranthe guttata HOM05D004443 ORTHO05D005421 2.9e-21 106.3 161 47.2
TWI56G1242 Tripterygium wilfordii HOM05D004443 ORTHO05D005421 2.9e-21 106.3 163 49.7
SGA_v2.0_scaffold24G10494 Striga asiatica HOM05D004443 ORTHO05D005421 3.8e-21 105.9 169 47.9
Hund27045 Selenicereus undatus HOM05D004443 ORTHO05D005421 1.1e-20 104.4 167 41.3
Cc10_g10510 Coffea canephora HOM05D004443 ORTHO05D005421 2.4e-20 103.2 108 51.9
GSVIVG01008926001 Vitis vinifera HOM05D004443 ORTHO05D005421 5.4e-20 102.1 184 50.0
Manes.02G160000 Manihot esculenta HOM05D004443 ORTHO05D005421 1.6e-19 100.5 173 50.9
Eucgr.F03751 Eucalyptus grandis HOM05D004443 ORTHO05D005421 2.1e-19 100.1 172 44.2
Cpa.g.sc36.11 Carica papaya HOM05D004443 ORTHO05D005421 4.6e-19 99.0 161 41.0
Gohir.A05G232400 Gossypium hirsutum HOM05D004443 ORTHO05D005421 7.8e-19 98.2 163 40.5
TAR376G1068 Trochodendron aralioides HOM05D004443 ORTHO05D005421 7.8e-19 98.2 163 41.7
COL.COLO4_38348 Corchorus olitorius HOM05D004443 ORTHO05D005421 1.0e-18 97.8 166 39.8
Potri.005G173300 Populus trichocarpa HOM05D004443 ORTHO05D005421 1.3e-18 97.4 159 47.2
Potri.002G087600 Populus trichocarpa HOM05D004443 ORTHO05D005421 1.7e-18 97.1 176 40.3
MSTRG.1478 Avicennia marina HOM05D004443 ORTHO05D005421 2.3e-18 96.7 114 49.1
MD15G1356500 Malus domestica HOM05D004443 ORTHO05D005421 3.9e-18 95.9 162 46.9
Migut.N03312 Erythranthe guttata HOM05D004443 ORTHO05D005421 6.6e-18 95.1 149 47.7
Gohir.D05G234800 Gossypium hirsutum HOM05D004443 ORTHO05D005421 8.7e-18 94.7 163 39.3
Gorai.009G243100 Gossypium raimondii HOM05D004443 ORTHO05D005421 8.7e-18 94.7 163 39.3
Sabra05G0130800 Salix brachista HOM05D004443 ORTHO05D005421 8.7e-18 94.7 172 47.1
Peaxi162Scf00339g00047 Petunia axillaris HOM05D004443 ORTHO05D005421 1.5e-17 94.0 148 39.9
Atru.chr13.1339 Acer truncatum HOM05D004443 ORTHO05D005421 7.3e-17 91.7 166 37.3
Atru.chr13.1382 Acer truncatum HOM05D004443 ORTHO05D005421 7.3e-17 91.7 166 37.3
Solyc11g013240.3 Solanum lycopersicum HOM05D004443 ORTHO05D005421 9.6e-17 91.3 167 41.3
Sed0020608 Sechium edule HOM05D004443 ORTHO05D005421 2.1e-16 90.1 109 52.3
Sopen11g008260 Solanum pennellii HOM05D004443 ORTHO05D005421 2.8e-16 89.7 140 46.4
CAN.G392.3 Capsicum annuum HOM05D004443 ORTHO05D005421 4.8e-16 89.0 140 46.4
SalBow7G0080 Salvia bowleyana HOM05D004443 ORTHO05D005421 1.1e-15 87.8 174 37.4
SalBow7G4055 Salvia bowleyana HOM05D004443 ORTHO05D005421 1.1e-15 87.8 174 37.4
Sc01g0001440 Simmondsia chinensis HOM05D004443 ORTHO05D005421 1.4e-15 87.4 126 42.1
Thhalv10018161m.g Eutrema salsugineum HOM05D004443 ORTHO05D005421 1.8e-15 87.0 164 40.9
DCAR_002660 Daucus carota HOM05D004443 ORTHO05D005421 2.4e-15 86.7 152 47.4
ClCG03G009370 Citrullus lanatus HOM05D004443 ORTHO05D005421 3.1e-15 86.3 115 49.6
Nn5g28118 Nelumbo nucifera HOM05D004443 ORTHO05D005421 3.1e-15 86.3 170 43.5
PGSC0003DMG402029032 Solanum tuberosum HOM05D004443 ORTHO05D005421 4.0e-15 85.9 141 46.8
Sabra02G0069100 Salix brachista HOM05D004443 ORTHO05D005421 5.3e-15 85.5 122 45.1
TAR628G1041 Trochodendron aralioides HOM05D004443 ORTHO05D005421 1.5e-14 84.0 116 44.8
Sp5g32890 Schrenkiella parvula HOM05D004443 ORTHO05D005421 2.6e-14 83.2 162 38.3
THA.LOC104813647 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 2.6e-14 83.2 163 38.0
Gorai.010G047900 Gossypium raimondii HOM05D004443 ORTHO05D005421 4.5e-14 82.4 167 41.3
Nitab4.5_0000193g0100 Nicotiana tabacum HOM05D004443 ORTHO05D005421 4.5e-14 82.4 105 46.7
Ah.05g172330 Amaranthus hybridus HOM05D004443 ORTHO05D005421 7.6e-14 81.6 118 42.4
PGR042G3639 Punica granatum HOM05D004443 ORTHO05D005421 7.6e-14 81.6 169 43.8
Nitab4.5_0000494g0040 Nicotiana tabacum HOM05D004443 ORTHO05D005421 1.3e-13 80.9 147 39.5
THA.LOC104800183 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 1.7e-13 80.5 163 36.2
EL10Ac1g00020 Beta vulgaris HOM05D004443 ORTHO05D005421 2.9e-13 79.7 169 40.8
AUR62023626 Chenopodium quinoa HOM05D004443 ORTHO05D005421 2.9e-13 79.7 107 41.1
CANSAT64G0744 Cannabis sativa HOM05D004443 ORTHO05D005421 3.8e-13 79.3 142 39.4
AL2G37950 Arabidopsis lyrata HOM05D004443 ORTHO05D005421 4.9e-13 79.0 163 38.7
Gohir.A06G041750 Gossypium hirsutum HOM05D004443 ORTHO05D005421 4.9e-13 79.0 169 39.6
Gohir.D06G042700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 1.1e-12 77.8 167 40.1
MELO3C003047.2 Cucumis melo HOM05D004443 ORTHO05D005421 2.4e-12 76.6 107 44.9
Carub.0002s2461 Capsella rubella HOM05D004443 ORTHO05D005421 3.2e-12 76.3 165 39.4
CARHR071230 Cardamine hirsuta HOM05D004443 ORTHO05D005421 2.1e-11 73.6 165 37.0
Oeu047924.1 Olea europaea HOM05D004443 ORTHO05D005421 2.1e-11 73.6 87 48.3
CSS0006777 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 3.5e-11 72.8 174 46.6
Aqoxy5G02432 Aquilegia oxysepala HOM05D004443 ORTHO05D005421 1.0e-10 71.2 114 41.2
Rhsim06G0108200 Rhododendron simsii HOM05D004443 ORTHO05D005421 1.8e-10 70.5 45 80.0
unitig_0.g2123 Utricularia gibba HOM05D004443 ORTHO05D005421 3.0e-10 69.7 126 42.9
Lsat_1_v5_gn_6_112781 Lactuca sativa HOM05D004443 ORTHO05D005421 6.7e-10 68.6 150 34.7
MBI03_g28297_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 6.7e-10 68.6 113 38.9
Prupe.1G503700 Prunus persica HOM05D004443 ORTHO05D005421 1.9e-09 67.0 93 46.2
AT1G77720 Arabidopsis thaliana HOM05D004443 ORTHO05D005421 3.7e-08 62.8 149 39.6
BraA07t31825Z Brassica rapa HOM05D004443 ORTHO05D005421 3.7e-08 62.8 114 38.6
Aa31LG7G5960 Aethionema arabicum HOM05D004443 ORTHO05D005421 4.8e-08 62.4 212 29.2
CDE11G0263 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 1.1e-07 61.2 143 37.8
PSO017G0128 Papaver somniferum HOM05D004443 ORTHO05D005421 4.0e-07 59.3 97 38.1
A07p27860 Brassica napus HOM05D004443 ORTHO05D005421 6.9e-07 58.5 118 39.8
BraA07t30425Z Brassica rapa HOM05D004443 ORTHO05D005421 6.9e-07 58.5 118 39.8
RcHm_v2.0_Chr6g0294911 Rosa chinensis HOM05D004443 ORTHO05D005421 1.2e-06 57.8 155 33.5
arahy.Tifrunner.gnm1.ann1.ZN5JRL Arachis hypogaea HOM05D004443 ORTHO05D005421 2.0e-06 57.0 108 39.8
PSO170G3840 Papaver somniferum HOM05D004443 ORTHO05D005421 3.4e-06 56.2 97 37.1
Lj1g0001137 Lotus japonicus HOM05D004443 ORTHO05D005421 5.8e-06 55.5 48 60.4


User provided reference genes

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