Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A595T22 Lonicera japonica HOM05D004443 ORTHO05D005421 9.1e-100 367.1 208 100.0
Lj4A601T6 Lonicera japonica HOM05D004443 ORTHO05D005421 9.4e-73 277.3 163 97.5
Dinv07918 Davidia involucrata HOM05D004443 ORTHO05D005421 1.5e-49 200.3 208 59.1
Actinidia29443 Actinidia chinensis HOM05D004443 ORTHO05D005421 2.3e-39 166.4 216 54.2
Oeu030035.2 Olea europaea HOM05D004443 ORTHO05D005421 3.0e-34 149.4 211 49.3
vmacro12543 Vaccinium macrocarpon HOM05D004443 ORTHO05D005421 1.5e-33 147.1 199 51.8
CSS0038352 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 1.9e-33 146.7 195 55.4
CSS0010818 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 5.6e-33 145.2 195 55.4
Haze_00499 Corylus avellana HOM05D004443 ORTHO05D005421 3.1e-31 139.4 208 45.7
Cc10_g10510 Coffea canephora HOM05D004443 ORTHO05D005421 2.2e-29 133.3 154 48.7
Cfa015975 Carpinus fangiana HOM05D004443 ORTHO05D005421 2.9e-29 132.9 216 44.0
TAR376G1068 Trochodendron aralioides HOM05D004443 ORTHO05D005421 1.9e-28 130.2 209 42.1
CiPaw.05G227100 Carya illinoinensis HOM05D004443 ORTHO05D005421 2.4e-28 129.8 180 46.7
Ciclev10000257m.g Citrus clementina HOM05D004443 ORTHO05D005421 3.2e-28 129.4 209 47.4
Peaxi162Scf00339g00047 Petunia axillaris HOM05D004443 ORTHO05D005421 2.1e-27 126.7 190 41.1
QL09p036005 Quercus lobata HOM05D004443 ORTHO05D005421 7.8e-27 124.8 156 46.8
SGA_v2.0_scaffold52G19007 Striga asiatica HOM05D004443 ORTHO05D005421 1.0e-26 124.4 209 48.3
Manes.02G160000 Manihot esculenta HOM05D004443 ORTHO05D005421 2.5e-25 119.8 209 47.4
Solyc11g013240.3 Solanum lycopersicum HOM05D004443 ORTHO05D005421 4.3e-25 119.0 209 41.6
CAN.G392.3 Capsicum annuum HOM05D004443 ORTHO05D005421 5.6e-25 118.6 182 45.6
Sopen11g008260 Solanum pennellii HOM05D004443 ORTHO05D005421 1.6e-24 117.1 182 45.6
GSVIVG01008926001 Vitis vinifera HOM05D004443 ORTHO05D005421 4.7e-24 115.5 210 47.6
Nitab4.5_0000494g0040 Nicotiana tabacum HOM05D004443 ORTHO05D005421 6.2e-24 115.2 189 41.8
TWI56G1242 Tripterygium wilfordii HOM05D004443 ORTHO05D005421 6.2e-24 115.2 209 43.1
PGSC0003DMG402029032 Solanum tuberosum HOM05D004443 ORTHO05D005421 2.4e-23 113.2 183 45.9
Hund27045 Selenicereus undatus HOM05D004443 ORTHO05D005421 5.3e-23 112.1 206 37.4
Cpa.g.sc36.11 Carica papaya HOM05D004443 ORTHO05D005421 6.9e-23 111.7 206 39.3
Gohir.D05G234800 Gossypium hirsutum HOM05D004443 ORTHO05D005421 6.9e-23 111.7 208 38.0
Gorai.009G243100 Gossypium raimondii HOM05D004443 ORTHO05D005421 6.9e-23 111.7 208 38.0
Nitab4.5_0000193g0100 Nicotiana tabacum HOM05D004443 ORTHO05D005421 6.9e-23 111.7 147 46.3
Nn5g28118 Nelumbo nucifera HOM05D004443 ORTHO05D005421 9.0e-23 111.3 219 43.8
Migut.C01174 Erythranthe guttata HOM05D004443 ORTHO05D005421 1.2e-22 110.9 207 42.5
MD15G1356500 Malus domestica HOM05D004443 ORTHO05D005421 1.2e-22 110.9 200 44.0
Sc01g0001440 Simmondsia chinensis HOM05D004443 ORTHO05D005421 1.2e-22 110.9 161 41.6
SGA_v2.0_scaffold24G10494 Striga asiatica HOM05D004443 ORTHO05D005421 1.2e-22 110.9 211 45.5
Gohir.A05G232400 Gossypium hirsutum HOM05D004443 ORTHO05D005421 2.0e-22 110.2 208 38.0
TAR628G1041 Trochodendron aralioides HOM05D004443 ORTHO05D005421 2.6e-22 109.8 157 44.6
Potri.005G173300 Populus trichocarpa HOM05D004443 ORTHO05D005421 7.6e-22 108.2 194 43.8
Sed0020608 Sechium edule HOM05D004443 ORTHO05D005421 2.9e-21 106.3 159 47.2
COL.COLO4_38348 Corchorus olitorius HOM05D004443 ORTHO05D005421 4.9e-21 105.5 208 36.5
MSTRG.1478 Avicennia marina HOM05D004443 ORTHO05D005421 6.4e-21 105.1 151 45.0
Atru.chr13.1339 Acer truncatum HOM05D004443 ORTHO05D005421 8.4e-21 104.8 208 36.1
Atru.chr13.1382 Acer truncatum HOM05D004443 ORTHO05D005421 8.4e-21 104.8 208 36.1
Potri.002G087600 Populus trichocarpa HOM05D004443 ORTHO05D005421 1.1e-20 104.4 211 39.3
Migut.N03312 Erythranthe guttata HOM05D004443 ORTHO05D005421 1.4e-20 104.0 191 43.5
CSS0006777 Camellia sinensis var. sinensis HOM05D004443 ORTHO05D005421 1.9e-20 103.6 212 45.8
ClCG03G009370 Citrullus lanatus HOM05D004443 ORTHO05D005421 1.9e-20 103.6 160 46.9
Eucgr.F03751 Eucalyptus grandis HOM05D004443 ORTHO05D005421 5.4e-20 102.1 209 40.2
Oeu047924.1 Olea europaea HOM05D004443 ORTHO05D005421 7.1e-20 101.7 137 44.5
DCAR_002660 Daucus carota HOM05D004443 ORTHO05D005421 3.5e-19 99.4 197 45.2
PGR042G3639 Punica granatum HOM05D004443 ORTHO05D005421 1.0e-18 97.8 211 41.7
Sabra05G0130800 Salix brachista HOM05D004443 ORTHO05D005421 3.9e-18 95.9 202 42.6
Gorai.010G047900 Gossypium raimondii HOM05D004443 ORTHO05D005421 8.7e-18 94.7 209 38.8
Ah.05g172330 Amaranthus hybridus HOM05D004443 ORTHO05D005421 1.1e-17 94.4 156 38.5
Gohir.D06G042700 Gossypium hirsutum HOM05D004443 ORTHO05D005421 3.3e-17 92.8 209 38.3
Sabra02G0069100 Salix brachista HOM05D004443 ORTHO05D005421 4.3e-17 92.4 157 42.0
CANSAT64G0744 Cannabis sativa HOM05D004443 ORTHO05D005421 9.6e-17 91.3 198 35.4
AUR62023626 Chenopodium quinoa HOM05D004443 ORTHO05D005421 9.6e-17 91.3 156 35.9
EL10Ac1g00020 Beta vulgaris HOM05D004443 ORTHO05D005421 1.6e-16 90.5 206 37.4
Gohir.A06G041750 Gossypium hirsutum HOM05D004443 ORTHO05D005421 1.6e-16 90.5 211 37.4
MELO3C003047.2 Cucumis melo HOM05D004443 ORTHO05D005421 3.6e-16 89.4 157 43.3
THA.LOC104800183 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 1.1e-15 87.8 209 34.0
Lsat_1_v5_gn_6_112781 Lactuca sativa HOM05D004443 ORTHO05D005421 1.4e-15 87.4 192 35.4
SalBow7G0080 Salvia bowleyana HOM05D004443 ORTHO05D005421 1.8e-15 87.0 210 36.7
SalBow7G4055 Salvia bowleyana HOM05D004443 ORTHO05D005421 1.8e-15 87.0 210 36.7
Thhalv10018161m.g Eutrema salsugineum HOM05D004443 ORTHO05D005421 2.4e-15 86.7 164 40.2
Aqoxy5G02432 Aquilegia oxysepala HOM05D004443 ORTHO05D005421 4.5e-14 82.4 156 37.8
THA.LOC104813647 Tarenaya hassleriana HOM05D004443 ORTHO05D005421 4.5e-14 82.4 208 33.2
HanXRQChr04g0111641 Helianthus annuus HOM05D004443 ORTHO05D005421 7.6e-14 81.6 186 41.9
Sp5g32890 Schrenkiella parvula HOM05D004443 ORTHO05D005421 7.6e-14 81.6 212 33.0
AL2G37950 Arabidopsis lyrata HOM05D004443 ORTHO05D005421 4.9e-13 79.0 211 35.1
MBI03_g28297_MAGBIO Magnolia biondii HOM05D004443 ORTHO05D005421 4.9e-13 79.0 167 35.3
Carub.0002s2461 Capsella rubella HOM05D004443 ORTHO05D005421 2.4e-12 76.6 212 36.3
Prupe.1G503700 Prunus persica HOM05D004443 ORTHO05D005421 7.1e-12 75.1 131 40.5
CARHR071230 Cardamine hirsuta HOM05D004443 ORTHO05D005421 9.3e-12 74.7 182 35.7
Dinv27370 Davidia involucrata HOM05D004443 ORTHO05D005421 9.3e-12 74.7 80 52.5
arahy.Tifrunner.gnm1.ann1.ZN5JRL Arachis hypogaea HOM05D004443 ORTHO05D005421 2.7e-11 73.2 155 38.7
unitig_0.g2123 Utricularia gibba HOM05D004443 ORTHO05D005421 1.0e-10 71.2 184 36.4
Rhsim06G0108200 Rhododendron simsii HOM05D004443 ORTHO05D005421 3.9e-10 69.3 45 77.8
HanXRQChr05g0151061 Helianthus annuus HOM05D004443 ORTHO05D005421 1.9e-09 67.0 207 32.4
arahy.Tifrunner.gnm1.ann1.BQZ9WD Arachis hypogaea HOM05D004443 ORTHO05D005421 4.3e-09 65.9 155 36.1
Lsat_1_v5_gn_1_8300 Lactuca sativa HOM05D004443 ORTHO05D005421 2.1e-08 63.5 183 35.5
BraA07t31825Z Brassica rapa HOM05D004443 ORTHO05D005421 8.1e-08 61.6 114 37.7
RcHm_v2.0_Chr6g0294911 Rosa chinensis HOM05D004443 ORTHO05D005421 8.1e-08 61.6 195 30.3
Aa31LG7G5960 Aethionema arabicum HOM05D004443 ORTHO05D005421 1.4e-07 60.8 201 29.4
AT1G77720 Arabidopsis thaliana HOM05D004443 ORTHO05D005421 1.4e-07 60.8 170 38.2
A07p27860 Brassica napus HOM05D004443 ORTHO05D005421 1.4e-07 60.8 155 36.8
BraA07t30425Z Brassica rapa HOM05D004443 ORTHO05D005421 1.4e-07 60.8 155 36.8
PSO017G0128 Papaver somniferum HOM05D004443 ORTHO05D005421 4.0e-07 59.3 149 30.2
FvH4_2g26330 Fragaria vesca HOM05D004443 ORTHO05D005421 1.5e-06 57.4 198 31.3
FAN24G3433 Fragaria x ananassa HOM05D004443 ORTHO05D005421 1.5e-06 57.4 198 31.3
CDE11G0263 Ceratophyllum demersum HOM05D004443 ORTHO05D005421 2.0e-06 57.0 206 30.1
PSO170G3840 Papaver somniferum HOM05D004443 ORTHO05D005421 3.4e-06 56.2 149 29.5
FAN20G1735 Fragaria x ananassa HOM05D004443 ORTHO05D005421 4.5e-06 55.8 193 30.1
VMungo1309G0089 Vigna mungo HOM05D004443 ORTHO05D005421 9.9e-06 54.7 92 44.6


User provided reference genes

Program Settings