Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A54G47 Lonicera japonica HOM05D002103 ORTHO05D004020 5.9e-143 510.8 243 100.0
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 4.4e-98 361.7 243 68.7
Lj4A775T63 Lonicera japonica HOM05D002103 ORTHO05D004020 3.5e-95 352.1 243 67.5
Rhsim06G0048300 Rhododendron simsii HOM05D002103 ORTHO05D004020 7.8e-95 350.9 243 67.1
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 1.1e-93 347.1 237 67.5
MSTRG.24326 Avicennia marina HOM05D002103 ORTHO05D004020 4.3e-93 345.1 241 65.1
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 3.6e-92 342.0 243 65.4
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 4.8e-92 341.7 243 65.4
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 6.2e-92 341.3 254 62.2
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 2.4e-88 329.3 241 63.1
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 5.4e-88 328.2 244 63.5
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 7.1e-88 327.8 244 63.9
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 7.1e-88 327.8 244 63.9
SalBow3G3013 Salvia bowleyana HOM05D002103 ORTHO05D004020 2.7e-87 325.9 241 60.2
Nitab4.5_0000686g0060 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.8e-86 323.2 225 63.1
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 3.0e-86 322.4 244 63.9
vmacro21537 Vaccinium macrocarpon HOM05D002103 ORTHO05D004020 5.1e-86 321.6 290 55.5
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 6.7e-86 321.2 241 60.6
Migut.N02702 Erythranthe guttata HOM05D002103 ORTHO05D004020 1.5e-85 320.1 243 60.1
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 3.3e-85 318.9 246 62.2
ECA246G3192 Erigeron canadensis HOM05D002103 ORTHO05D004020 5.6e-85 318.2 224 62.1
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 9.6e-85 317.4 237 62.9
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 9.6e-85 317.4 222 64.9
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.3e-84 317.0 225 64.0
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 3.7e-84 315.5 244 60.2
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 3.7e-84 315.5 223 64.6
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 4.8e-84 315.1 227 64.8
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 4.8e-84 315.1 229 65.1
Potri.002G127700 Populus trichocarpa HOM05D002103 ORTHO05D004020 6.2e-84 314.7 246 60.6
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 8.1e-84 314.3 234 63.2
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 8.1e-84 314.3 240 60.8
Nitab4.5_0001101g0080 Nicotiana tabacum HOM05D002103 ORTHO05D004020 8.1e-84 314.3 223 62.3
HanXRQChr02g0037661 Helianthus annuus HOM05D002103 ORTHO05D004020 1.1e-83 313.9 230 60.4
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 1.1e-83 313.9 245 62.4
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 1.4e-83 313.5 242 62.0
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 1.4e-83 313.5 225 62.2
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 1.8e-83 313.2 241 61.0
Oeu009550.1 Olea europaea HOM05D002103 ORTHO05D004020 4.0e-83 312.0 243 58.4
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 5.3e-83 311.6 245 60.8
Gorai.002G131200 Gossypium raimondii HOM05D002103 ORTHO05D004020 6.9e-83 311.2 246 60.6
Glyma.04G037600 Glycine max HOM05D002103 ORTHO05D004020 9.0e-83 310.8 233 63.1
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 9.0e-83 310.8 243 59.3
TWI56G0490 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 9.0e-83 310.8 223 62.8
Gohir.D01G106900 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.2e-82 310.5 246 60.2
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 2.0e-82 309.7 243 60.9
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.0e-82 309.7 246 60.2
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 2.0e-82 309.7 242 59.9
ECA247G1496 Erigeron canadensis HOM05D002103 ORTHO05D004020 2.6e-82 309.3 224 60.7
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 3.4e-82 308.9 244 59.0
Glyma.06G038500 Glycine max HOM05D002103 ORTHO05D004020 4.5e-82 308.5 226 64.6
Duzib116G0153 Durio zibethinus HOM05D002103 ORTHO05D004020 5.8e-82 308.1 233 62.7
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 7.6e-82 307.8 241 59.8
ClCG08G015730 Citrullus lanatus HOM05D002103 ORTHO05D004020 9.9e-82 307.4 246 58.5
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 9.9e-82 307.4 222 61.7
PGSC0003DMG400007986 Solanum tuberosum HOM05D002103 ORTHO05D004020 9.9e-82 307.4 225 61.8
DCAR_019463 Daucus carota HOM05D002103 ORTHO05D004020 1.3e-81 307.0 241 57.3
Glyma.14G082000 Glycine max HOM05D002103 ORTHO05D004020 1.7e-81 306.6 239 60.3
Sopen07g013400 Solanum pennellii HOM05D002103 ORTHO05D004020 2.2e-81 306.2 243 55.6
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 2.9e-81 305.8 231 61.9
Sopen04g032770 Solanum pennellii HOM05D002103 ORTHO05D004020 4.9e-81 305.1 225 60.9
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.1e-80 303.9 240 58.3
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 1.1e-80 303.9 242 60.3
Solyc04g079160.4 Solanum lycopersicum HOM05D002103 ORTHO05D004020 1.1e-80 303.9 225 60.9
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 1.4e-80 303.5 247 58.7
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 1.4e-80 303.5 244 58.6
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 1.9e-80 303.1 231 61.9
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 2.5e-80 302.8 238 58.8
Lsat_1_v5_gn_1_20261 Lactuca sativa HOM05D002103 ORTHO05D004020 3.2e-80 302.4 236 58.5
Medtr3g101480 Medicago truncatula HOM05D002103 ORTHO05D004020 4.2e-80 302.0 231 61.0
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 7.1e-80 301.2 231 60.2
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 2.1e-79 299.7 242 57.9
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 2.1e-79 299.7 244 61.5
VMungo0647G0899 Vigna mungo HOM05D002103 ORTHO05D004020 2.7e-79 299.3 242 57.0
AL7G18190 Arabidopsis lyrata HOM05D002103 ORTHO05D004020 4.6e-79 298.5 243 57.2
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 4.6e-79 298.5 233 61.4
Hund17586 Selenicereus undatus HOM05D002103 ORTHO05D004020 4.6e-79 298.5 241 59.3
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 6.0e-79 298.1 223 62.3
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 7.9e-79 297.7 231 61.5
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 1.0e-78 297.4 232 59.9
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 2.3e-78 296.2 232 59.1
AT4G33380 Arabidopsis thaliana HOM05D002103 ORTHO05D004020 3.9e-78 295.4 244 57.0
arahy.Tifrunner.gnm1.ann1.Z2DAXP Arachis hypogaea HOM05D002103 ORTHO05D004020 3.9e-78 295.4 221 62.0
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 3.9e-78 295.4 235 59.1
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 8.7e-78 294.3 263 56.3
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 1.1e-77 293.9 241 57.7
Medtr1g019780 Medicago truncatula HOM05D002103 ORTHO05D004020 1.1e-77 293.9 238 59.2
Lalb_Chr23g0266991 Lupinus albus HOM05D002103 ORTHO05D004020 1.9e-77 293.1 239 59.8
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 2.5e-77 292.7 229 59.4
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 2.5e-77 292.7 229 59.4
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 2.5e-77 292.7 229 59.4
Carub.0007s0711 Capsella rubella HOM05D002103 ORTHO05D004020 2.5e-77 292.7 241 57.3
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 3.3e-77 292.4 240 58.8
CAN.G371.35 Capsicum annuum HOM05D002103 ORTHO05D004020 3.3e-77 292.4 225 58.7
Lsat_1_v5_gn_6_113661 Lactuca sativa HOM05D002103 ORTHO05D004020 4.3e-77 292.0 224 57.6
Phvul.001G021000 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 4.3e-77 292.0 245 57.6
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 9.6e-77 290.8 243 57.2
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 1.3e-76 290.4 229 59.4
Nitab4.5_0004897g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.3e-76 290.4 198 63.1
Psat6g012640 Pisum sativum HOM05D002103 ORTHO05D004020 1.3e-76 290.4 238 58.8
SalBow7G3772 Salvia bowleyana HOM05D002103 ORTHO05D004020 1.3e-76 290.4 252 53.6
FAN20G2977 Fragaria x ananassa HOM05D002103 ORTHO05D004020 1.6e-76 290.0 241 56.0
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 2.1e-76 289.7 229 59.4
AUR62039305 Chenopodium quinoa HOM05D002103 ORTHO05D004020 2.1e-76 289.7 253 55.3
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 2.1e-76 289.7 222 61.7
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 6.2e-76 288.1 241 55.6
FvH4_2g34620 Fragaria vesca HOM05D002103 ORTHO05D004020 8.2e-76 287.7 241 55.6
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 1.1e-75 287.3 241 56.0
Lj5g0018432 Lotus japonicus HOM05D002103 ORTHO05D004020 1.4e-75 287.0 246 56.1
BolC3t20965H Brassica oleracea HOM05D002103 ORTHO05D004020 1.8e-75 286.6 229 58.1
arahy.Tifrunner.gnm1.ann1.3IZ1KA Arachis hypogaea HOM05D002103 ORTHO05D004020 2.4e-75 286.2 239 57.7
arahy.Tifrunner.gnm1.ann1.II6H71 Arachis hypogaea HOM05D002103 ORTHO05D004020 2.4e-75 286.2 239 57.7
arahy.Tifrunner.gnm1.ann1.YT15EQ Arachis hypogaea HOM05D002103 ORTHO05D004020 2.4e-75 286.2 239 57.7
Lalb_Chr14g0368771 Lupinus albus HOM05D002103 ORTHO05D004020 2.4e-75 286.2 242 59.1
QL02p005379 Quercus lobata HOM05D002103 ORTHO05D004020 3.1e-75 285.8 225 59.6
BcaC09g52142 Brassica carinata HOM05D002103 ORTHO05D004020 5.3e-75 285.0 226 59.3
RcHm_v2.0_Chr6g0307681 Rosa chinensis HOM05D002103 ORTHO05D004020 5.3e-75 285.0 239 54.8
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 9.0e-75 284.3 229 59.0
Ah.05g168830 Amaranthus hybridus HOM05D002103 ORTHO05D004020 2.0e-74 283.1 239 56.9
FAN27G3124 Fragaria x ananassa HOM05D002103 ORTHO05D004020 2.0e-74 283.1 241 54.8
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 3.4e-74 282.3 228 57.9
PGSC0003DMG400041182 Solanum tuberosum HOM05D002103 ORTHO05D004020 3.4e-74 282.3 198 60.6
Lalb_Chr22g0355191 Lupinus albus HOM05D002103 ORTHO05D004020 7.6e-74 281.2 233 57.9
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 1.7e-73 280.0 252 53.6
Psat0s3123g0080 Pisum sativum HOM05D002103 ORTHO05D004020 2.2e-73 279.6 242 55.0
Nitab4.5_0001024g0020 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.4e-72 276.9 195 61.0
Os06g0214100 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 3.2e-72 275.8 241 52.7
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 4.2e-72 275.4 233 54.1
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 1.6e-71 273.5 221 57.9
CSS0001953 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 1.6e-71 273.5 243 57.6
Migut.C00595 Erythranthe guttata HOM05D002103 ORTHO05D004020 1.6e-71 273.5 196 62.8
PSO541G4087 Papaver somniferum HOM05D002103 ORTHO05D004020 2.7e-71 272.7 231 54.1
Atru.chr11.91 Acer truncatum HOM05D002103 ORTHO05D004020 6.1e-71 271.6 218 58.7
PSO675G6562 Papaver somniferum HOM05D002103 ORTHO05D004020 7.9e-71 271.2 238 52.9
AUR62022428 Chenopodium quinoa HOM05D002103 ORTHO05D004020 3.9e-70 268.9 199 60.3
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 1.1e-69 267.3 237 54.0
Aqoxy6G01360 Aquilegia oxysepala HOM05D002103 ORTHO05D004020 7.4e-69 264.6 242 50.0
Os02g0761600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 7.4e-69 264.6 240 52.1
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 3.7e-68 262.3 163 68.1
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 4.8e-68 261.9 164 67.7
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 2.0e-66 256.5 207 58.0
ATR0100G056 Amborella trichopoda HOM05D002103 ORTHO05D004020 1.0e-65 254.2 230 53.9
Zm00001eb255700 Zea mays HOM05D002103 ORTHO05D004020 2.9e-65 252.7 243 51.4
HPP92_027223 Vanilla planifolia HOM05D002103 ORTHO05D004020 3.8e-65 252.3 230 52.2
CDE02G4038 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 1.0e-62 244.2 177 59.9
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 3.0e-62 242.7 206 53.9
Zm00001eb279800 Zea mays HOM05D002103 ORTHO05D004020 1.2e-58 230.7 169 61.5
Aa31LG3G7420 Aethionema arabicum HOM05D002103 ORTHO05D004020 1.3e-57 227.3 226 52.7
arahy.Tifrunner.gnm1.ann1.S2AHNK Arachis hypogaea HOM05D002103 ORTHO05D004020 1.4e-56 223.8 198 52.5
arahy.Tifrunner.gnm1.ann1.VN362G Arachis hypogaea HOM05D002103 ORTHO05D004020 1.4e-56 223.8 198 52.5
RcHm_v2.0_Chr6g0307521 Rosa chinensis HOM05D002103 ORTHO05D004020 6.7e-54 214.9 245 44.9
SEGI_41572 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 1.5e-53 213.8 192 49.5
TPR.G13687 Trifolium pratense HOM05D002103 ORTHO05D004020 2.6e-53 213.0 287 42.5
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.0e-49 201.1 230 42.6
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.3e-49 200.7 233 43.8
Actinidia22618 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.7e-49 200.3 121 68.6
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.8e-49 199.1 243 42.8
Lj3A736T18 Lonicera japonica HOM05D002103 ORTHO05D004020 1.2e-47 194.1 108 87.0
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.1e-47 193.4 200 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 3.6e-47 192.6 228 45.2
Psat3g152440 Pisum sativum HOM05D002103 ORTHO05D004020 3.8e-41 172.6 115 65.2
Psat7g222680 Pisum sativum HOM05D002103 ORTHO05D004020 7.2e-40 168.3 115 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2117 Anthoceros agrestis HOM05D002103 ORTHO05D004020 3.4e-37 159.5 117 61.5
RcHm_v2.0_Chr6g0258511 Rosa chinensis HOM05D002103 ORTHO05D004020 1.1e-32 144.4 86 65.1
Pp3c27_1800 Physcomitrium patens HOM05D002103 ORTHO05D004020 7.2e-32 141.7 149 46.3
Oeu006152.1 Olea europaea HOM05D002103 ORTHO05D004020 1.8e-30 137.1 82 70.7
Pp3c5_13510 Physcomitrium patens HOM05D002103 ORTHO05D004020 1.8e-30 137.1 124 52.4
MSTRG.22266 Avicennia marina HOM05D002103 ORTHO05D004020 1.0e-25 121.3 104 59.6
MCO12G397 Micromonas commoda HOM05D002103 ORTHO05D004020 4.7e-23 112.5 115 46.1
A03p61950 Brassica napus HOM05D002198 ORTHO05D002409 4.0e-22 109.4 142 44.4
MCO11G730 Micromonas commoda HOM05D002103 ORTHO05D004020 1.3e-20 104.4 118 39.8
PRCOL_00001864 Prasinoderma coloniale HOM05D002103 ORTHO05D004020 3.5e-18 96.3 124 37.9
unitig_61.g26339 Utricularia gibba HOM05D002103 ORTHO05D004020 3.5e-18 96.3 114 43.0
BraA03t15234Z Brassica rapa HOM05D002103 ORTHO05D004020 1.3e-17 94.4 107 44.9
SMO271G0025 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 2.3e-17 93.6 62 61.3
PRCOL_00003789 Prasinoderma coloniale HOM05D002103 ORTHO05D004020 3.3e-16 89.7 116 36.2
MCO03G389 Micromonas commoda HOM05D002103 ORTHO05D004020 4.3e-16 89.4 123 35.8
Cre03.g165350 Chlamydomonas reinhardtii HOM05D002103 ORTHO05D004020 2.1e-15 87.0 122 34.4
Prupe.3G111800 Prunus persica HOM05D002103 ORTHO05D004020 1.2e-13 81.3 196 29.6
unitig_61.g26338 Utricularia gibba HOM05D000186 ORTHO05D017738 1.3e-12 77.8 49 65.3
Zm00001eb288960 Zea mays HOM05D002103 ORTHO05D001928 2.7e-10 70.1 94 42.6
Pp3c22_5260 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.9e-09 66.2 99 35.4
EL10Ac1g01784 Beta vulgaris HOM05D002103 ORTHO05D004020 1.6e-07 60.8 59 59.3
ECA246G3991 Erigeron canadensis HOM05D001887 ORTHO05D003756 6.8e-06 55.5 80 35.0


User provided reference genes

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