Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 2405.6 1235 100.0
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1734.2 1239 73.0
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1712.2 1243 72.4
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1676.4 1238 71.4
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1655.6 1241 70.4
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1637.9 1240 69.5
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1630.9 1242 70.3
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1624.4 1248 68.8
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1624.0 1245 69.1
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1623.2 1234 70.7
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1611.3 1234 68.5
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1607.8 1235 69.5
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1602.8 1236 68.0
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1590.5 1244 67.7
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1577.8 1162 71.3
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1564.7 1179 69.2
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1563.1 1165 70.3
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1562.4 1231 67.4
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1562.4 1245 67.4
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1559.7 1242 66.2
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1557.7 1241 66.3
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1557.3 1253 67.9
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1556.6 1241 66.2
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1555.0 1249 67.9
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1553.5 1250 67.8
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1550.0 1241 66.6
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1545.0 1256 66.5
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1540.4 1244 66.1
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1536.5 1217 69.0
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1535.0 1234 66.0
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1531.2 1245 66.9
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1522.7 1251 66.0
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1513.8 1247 65.5
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1508.8 1233 66.8
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1507.3 1232 66.2
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1501.9 1242 65.1
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1500.0 1215 68.4
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1494.6 1251 65.5
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1484.2 1257 64.1
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1481.5 1163 66.6
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1470.3 1243 63.9
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1469.1 1244 64.0
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1468.8 1199 65.9
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1468.0 1257 63.6
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1467.6 1244 63.2
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1465.7 1186 66.1
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1456.0 1241 62.9
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1449.1 1236 63.5
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1446.4 1186 65.3
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1445.6 1247 63.8
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1445.3 1198 63.4
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1444.1 1239 63.0
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1443.7 1203 63.3
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1443.3 1082 69.9
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1443.3 1245 63.1
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1442.9 1239 63.0
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1442.9 1190 65.6
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1441.4 1198 64.0
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1441.4 1198 64.0
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1441.4 1180 65.7
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1437.6 1197 64.6
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1435.2 1254 63.4
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1433.3 1062 73.4
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1432.2 1202 64.7
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1423.7 1262 62.6
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1417.5 1106 68.4
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1416.7 1143 65.4
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1416.4 1242 61.8
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1414.4 1244 61.8
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1399.8 1238 62.0
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1389.0 929 77.2
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1387.1 1108 67.1
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1381.7 1257 61.0
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1377.5 1239 61.2
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1343.2 1238 58.8
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1336.2 1171 62.5
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1326.2 1241 59.7
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1324.3 1262 58.8
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1310.4 969 69.6
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1304.3 971 70.5
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1300.8 963 68.5
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1283.9 967 69.1
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1280.0 1084 63.5
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1276.9 1110 62.9
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1271.9 1160 59.4
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1266.9 965 68.2
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1259.2 977 65.9
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1257.3 1217 59.4
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1240.3 969 65.6
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1237.2 1038 64.5
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1234.9 1055 64.5
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1231.9 966 65.8
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1178.3 961 63.9
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 0.0e+00 1175.6 1184 56.6
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 0.0e+00 1165.2 1044 63.5
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 0.0e+00 1103.6 1133 55.9
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1102.4 899 63.4
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 7.8e-300 1034.2 1075 55.4
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 5.7e-258 895.2 888 56.5
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 4.7e-252 875.5 1287 43.0
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 4.2e-245 852.4 1243 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 7.7e-239 831.6 1215 44.4
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.0e-235 821.2 1109 44.5
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 2.0e-207 727.2 1195 40.0
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 9.8e-202 708.4 718 58.1
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 8.3e-193 678.7 540 64.4
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.2e-187 659.4 587 59.8
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 4.3e-173 613.2 741 49.4
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.7e-169 601.3 464 67.7
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 3.7e-124 450.7 1363 30.2
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 3.1e-115 421.0 332 68.4
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 3.1e-115 421.0 332 68.4
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 3.1e-115 421.0 332 68.4
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 2.0e-101 375.2 315 61.0
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 9.5e-96 356.3 203 81.8
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 5.8e-85 320.5 182 81.9
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 1.0e-81 309.7 295 60.7
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 2.3e-81 308.5 247 69.2
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 3.0e-81 308.1 172 82.0
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 2.0e-77 295.4 270 63.3
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 5.4e-75 287.3 156 84.0
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.1e-71 275.4 153 82.4
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 1.5e-69 269.2 151 83.4
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 2.9e-68 265.0 183 77.6
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 2.6e-61 241.9 128 85.2
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 9.0e-54 216.9 281 47.0
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 6.0e-50 204.1 260 51.5
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 3.9e-49 201.4 175 61.1
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 9.0e-46 190.3 107 83.2
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.1e-43 183.3 273 39.9
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 1.9e-43 182.6 300 37.7
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 4.6e-42 177.9 104 78.8
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.2e-31 142.5 205 43.9
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 6.5e-28 131.0 160 53.1
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 4.6e-26 124.8 123 59.3
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 6.1e-26 124.4 268 37.3
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-25 122.9 72 83.3
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 3.9e-25 121.7 201 48.3
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.2e-23 114.0 261 31.0
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.1e-22 110.5 274 30.3
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-20 106.3 298 28.2
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.4e-19 103.2 279 29.0
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.2e-19 101.7 279 28.0
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 4.2e-19 101.7 78 67.9
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.4e-19 100.5 285 27.4
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.7e-18 99.0 266 29.3
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 3.0e-17 95.5 73 68.5
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.9e-17 95.1 261 27.6
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.7e-17 94.4 300 27.7
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.7e-17 94.4 292 27.4
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.8e-17 94.0 268 26.9
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 5.7e-16 91.3 271 28.8
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.3e-15 90.1 267 30.0
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.7e-15 88.6 273 28.6
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.3e-15 87.8 150 34.0
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 6.3e-15 87.8 246 30.5
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 1.1e-14 87.0 46 82.6
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.2e-13 83.6 282 25.2
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.5e-13 82.0 294 24.5
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 5.9e-13 81.3 273 25.6
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.5e-12 77.8 291 25.4
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.5e-11 75.9 299 25.8
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.2e-11 75.5 254 27.6
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 5.5e-11 74.7 274 27.0
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-10 73.6 152 31.6
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 2.1e-10 72.8 278 25.9
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 3.6e-10 72.0 64 59.4
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 8.0e-10 70.9 272 26.5
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 1.8e-09 69.7 330 25.2
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.0e-09 68.6 273 27.8
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 1.2e-08 67.0 155 30.3
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.2e-08 67.0 38 76.3
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 2.6e-08 65.9 53 67.9
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 7.5e-08 64.3 256 25.4
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 2.2e-07 62.8 179 31.3
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.8e-07 62.4 182 27.5
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 3.7e-07 62.0 252 25.0
Cfa022866 Carpinus fangiana HOM05D012225 ORTHO05D125906 8.2e-07 60.8 222 24.3
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.8e-06 59.7 256 24.6
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.8e-06 59.7 256 24.6


User provided reference genes

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