Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A53T51 Lonicera japonica HOM05D000003 ORTHO05D000004 7.1e-71 270.4 128 100.0
Lj4P263T47 Lonicera japonica HOM05D000003 ORTHO05D000004 6.1e-22 107.8 70 67.1
Lj4P659T5 Lonicera japonica HOM05D000003 ORTHO05D000004 4.1e-18 95.1 106 40.6
Lj1P164T10 Lonicera japonica HOM05D000003 ORTHO05D000004 4.5e-17 91.7 98 40.8
Lj6P383T11 Lonicera japonica HOM05D000003 ORTHO05D000004 1.5e-15 86.7 107 41.1
Lj4C747T2 Lonicera japonica HOM05D000003 ORTHO05D000004 8.0e-14 80.9 102 38.2
Lj9C481T2 Lonicera japonica HOM05D000003 ORTHO05D000004 1.4e-13 80.1 105 39.0
Lj3C690G12 Lonicera japonica HOM05D000003 ORTHO05D000004 1.8e-13 79.7 106 34.9
DCAR_028352 Daucus carota HOM05D000003 ORTHO05D000004 3.0e-13 79.0 102 37.3
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-13 78.2 102 38.2
CANSAT11G0789 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-12 77.0 102 38.2
CANSAT25G2690 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-12 77.0 100 41.0
CANSAT64G1088 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-12 76.6 102 40.2
CANSAT01G3218 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-12 75.9 102 38.2
Lj1P687T6 Lonicera japonica HOM05D000003 ORTHO05D000004 2.6e-12 75.9 104 36.5
CANSAT35G1274 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-12 75.1 104 36.5
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 9.8e-12 73.9 104 37.5
CANSAT64G1009 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-11 73.6 100 40.0
Lj2P397T13 Lonicera japonica HOM05D000003 ORTHO05D000004 1.3e-11 73.6 69 49.3
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.3e-11 73.6 115 31.3
CANSAT01G2140 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-11 73.2 101 34.7
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-11 73.2 100 38.0
TWI56G0835 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.2e-11 72.8 102 38.2
CANSAT56G1927 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-11 72.4 100 39.0
Lj2C969T7 Lonicera japonica HOM05D000003 ORTHO05D000004 3.7e-11 72.0 96 36.5
CANSAT01G2872 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-11 71.6 102 32.4
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-11 70.9 102 36.3
CANSAT64G1929 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-11 70.9 100 34.0
Potri.002G000350 Populus trichocarpa HOM05D000003 ORTHO05D000006 1.1e-10 70.5 107 34.6
CANSAT11G2463 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-10 70.1 98 37.8
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-10 69.7 100 36.0
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-10 69.7 100 36.0
CANSAT54G1259 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-10 69.7 102 36.3
CANSAT64G1282 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-10 69.7 100 39.0
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-10 69.3 99 34.3
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-10 69.3 100 36.0
CANSAT54G0092 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-10 68.9 98 37.8
CANSAT01G2780 Cannabis sativa HOM05D000003 ORTHO05D000004 4.1e-10 68.6 99 36.4
CANSAT56G2527 Cannabis sativa HOM05D000003 ORTHO05D000004 4.1e-10 68.6 102 37.3
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 4.1e-10 68.6 115 30.4
CANSAT56G4477 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-10 68.2 100 34.0
CANSAT80G1423 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-10 68.2 120 35.8
Lj4P842T29 Lonicera japonica HOM05D000003 ORTHO05D000004 5.4e-10 68.2 88 38.6
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-10 67.8 123 34.1
CANSAT56G0879 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-10 67.8 100 31.0
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-10 67.4 104 36.5
CANSAT11G1820 Cannabis sativa HOM05D000003 ORTHO05D000004 9.1e-10 67.4 99 37.4
CANSAT25G0043 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 66.6 100 33.0
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 66.6 99 35.4
Lj5A492G8 Lonicera japonica HOM05D000003 ORTHO05D013548 1.6e-09 66.6 105 36.2
CANSAT01G0249 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-09 66.2 98 35.7
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-09 66.2 99 33.3
CANSAT11G0997 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-09 65.9 102 36.3
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-09 65.9 99 35.4
CANSAT78G0637 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-09 65.9 101 33.7
SHI02062 Sapria himalayana HOM05D000003 ORTHO05D000004 2.7e-09 65.9 102 30.4
CANSAT35G0246 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-09 65.1 101 31.7
CANSAT80G0320 Cannabis sativa HOM05D000003 ORTHO05D000167 4.5e-09 65.1 103 32.0
Lj7C520T4 Lonicera japonica HOM05D000003 ORTHO05D000004 4.5e-09 65.1 81 38.3
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-09 64.7 102 34.3
CANSAT11G0329 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-09 64.7 102 34.3
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-09 64.7 100 32.0
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-09 64.7 88 40.9
CANSAT64G1221 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-09 64.7 100 34.0
SHI45994 Sapria himalayana HOM05D000003 ORTHO05D000004 5.9e-09 64.7 101 27.7
CANSAT01G0780 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-09 64.3 83 42.2
CANSAT11G0415 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-08 63.9 100 38.0
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-08 63.9 99 33.3
CANSAT64G0189 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-08 63.9 81 38.3
Nn4g25746 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.0e-08 63.9 87 33.3
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.5 104 34.6
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.5 104 34.6
CANSAT01G2533 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-08 63.5 93 38.7
CANSAT21G1879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-08 63.5 100 36.0
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-08 63.5 103 32.0
Manes.10G073737 Manihot esculenta HOM05D000003 ORTHO05D000004 1.3e-08 63.5 103 30.1
CANSAT64G1116 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-08 63.2 101 33.7
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-08 62.8 104 32.7
CANSAT54G1690 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-08 62.8 98 35.7
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-08 62.8 100 34.0
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-08 62.8 100 33.0
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 2.2e-08 62.8 101 30.7
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.2e-08 62.8 97 32.0
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-08 62.4 105 35.2
CANSAT25G2465 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-08 62.4 93 35.5
Cc01_g07280 Coffea canephora HOM05D000003 ORTHO05D000004 2.9e-08 62.4 107 29.9
Lj8P497T33 Lonicera japonica HOM05D000003 ORTHO05D000004 2.9e-08 62.4 103 34.0
CANSAT56G0362 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-08 62.0 101 33.7
CANSAT64G1612 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-08 62.0 103 33.0
CANSAT64G2436 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-08 62.0 99 35.4
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-08 61.6 105 33.3
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-08 61.6 100 30.0
CANSAT64G1449 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-08 61.6 100 29.0
CANSAT80G1540 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-08 61.6 97 33.0
Atru.chr3.1907 Acer truncatum HOM05D000540 ORTHO05D000681 6.5e-08 61.2 105 32.4
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-08 61.2 100 34.0
CANSAT80G0006 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-08 61.2 100 33.0
FvH4_5g04240 Fragaria vesca HOM05D000003 ORTHO05D000004 6.5e-08 61.2 107 29.9
Lj8C26T8 Lonicera japonica HOM05D000003 ORTHO05D000004 6.5e-08 61.2 77 41.6
QL12p036057 Quercus lobata HOM05D001694 ORTHO05D000248 6.5e-08 61.2 104 29.8
Aa31sc256G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.5e-08 60.8 112 28.6
CANSAT25G1387 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-08 60.8 100 32.0
CANSAT25G2191 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-08 60.8 89 38.2
CANSAT35G1728 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-08 60.8 97 33.0
CANSAT80G0971 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-08 60.8 102 32.4
Manes.10G106150 Manihot esculenta HOM05D000003 ORTHO05D000004 8.5e-08 60.8 100 28.0
CANSAT21G1925 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-07 60.5 99 35.4
CANSAT25G1030 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.5 102 36.3
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.5 100 31.0
Cc08_g06220 Coffea canephora HOM05D000003 ORTHO05D000004 1.1e-07 60.5 124 26.6
Nn8g39836 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.1e-07 60.5 89 32.6
BcaB05g24532 Brassica carinata HOM05D000003 ORTHO05D001091 1.5e-07 60.1 111 32.4
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 1.5e-07 60.1 104 30.8
Lj8P375T8 Lonicera japonica HOM05D000003 ORTHO05D000004 1.5e-07 60.1 108 34.3
Nn1g03438 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.5e-07 60.1 78 34.6
CANSAT07G0003 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 59.7 98 34.7
CiPaw.07G085700 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.9e-07 59.7 100 30.0
Lj5P393T12 Lonicera japonica HOM05D000003 ORTHO05D000004 1.9e-07 59.7 70 41.4
Aa31LG3G4270 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-07 59.3 107 31.8
Aa31sc168G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-07 59.3 109 27.5
CANSAT01G1286 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-07 59.3 90 37.8
Atru.chr12.2026 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-07 58.9 104 30.8
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-07 58.9 116 31.0
CANSAT35G0201 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-07 58.9 100 33.0
Lj9P357T36 Lonicera japonica HOM05D000003 ORTHO05D000004 3.2e-07 58.9 66 40.9
Nn5g27225 Nelumbo nucifera HOM05D000003 ORTHO05D000004 3.2e-07 58.9 88 33.0
QL12p023981 Quercus lobata HOM05D000003 ORTHO05D000004 3.2e-07 58.9 124 29.8
CANSAT78G0093 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-07 58.5 98 33.7
Prupe.6G123900 Prunus persica HOM05D000003 ORTHO05D000004 4.2e-07 58.5 104 27.9
TWI09G0223 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.2e-07 58.5 96 31.2
Atru.chr6.1671 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-07 58.2 105 29.5
Atru.chr8.1655 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-07 58.2 104 31.7
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-07 58.2 120 28.3
CANSAT54G1058 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-07 58.2 104 29.8
CANSAT80G0272 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-07 58.2 101 31.7
Manes.16G107751 Manihot esculenta HOM05D000003 ORTHO05D000004 5.5e-07 58.2 101 28.7
Atru.chr12.2342 Acer truncatum HOM05D000003 ORTHO05D000004 7.2e-07 57.8 99 31.3
CANSAT35G0480 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-07 57.8 98 34.7
Lj3P232T14 Lonicera japonica HOM05D000003 ORTHO05D000004 7.2e-07 57.8 85 34.1
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 9.4e-07 57.4 104 30.8
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 9.4e-07 57.4 105 32.4
Aa31LG7G3330 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.4e-07 57.4 107 30.8
CANSAT21G0208 Cannabis sativa HOM05D000003 ORTHO05D000167 9.4e-07 57.4 103 30.1
CANSAT25G0762 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-07 57.4 102 33.3
CANSAT64G0723 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-07 57.4 97 30.9
Prupe.4G011200 Prunus persica HOM05D000003 ORTHO05D000004 9.4e-07 57.4 104 26.9
Atru.chr3.3937 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 57.0 104 33.7
CANSAT01G1615 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.0 99 31.3
CANSAT11G0043 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.0 83 36.1
Atru.chr10.149 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 104 29.8
Aa31LG2G18830 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 106 29.2
CANSAT21G0772 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 102 31.4
CANSAT21G1908 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 99 33.3
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 101 32.7
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 1.6e-06 56.6 101 31.7
Aa31LG2G12260 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.2 110 28.2
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.2 124 26.6
CANSAT21G0949 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.2 89 34.8
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.2 102 31.4
CANSAT80G0248 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.2 98 27.6
Cpa.g.c27582.3 Carica papaya HOM05D057707 ORTHO05D043509 2.1e-06 56.2 95 33.7
FvH4_4g13062 Fragaria vesca HOM05D000003 ORTHO05D011454 2.1e-06 56.2 104 29.8
Aa31LG3G5250 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 113 28.3
BcaB01g01579 Brassica carinata HOM05D000003 ORTHO05D001498 2.7e-06 55.8 105 29.5
CANSAT35G1149 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 55.8 99 33.3
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 2.7e-06 55.8 102 32.4
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 2.7e-06 55.8 102 32.4
Atru.chr11.920 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.5 104 30.8
Atru.chr2.678 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.5 104 28.8
Aa31LG8G12080 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-06 55.5 135 28.1
CANSAT56G4048 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-06 55.5 100 30.0
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.6e-06 55.5 104 29.8
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.6e-06 55.5 114 25.4
A08p07790 Brassica napus HOM05D000003 ORTHO05D001091 4.7e-06 55.1 111 31.5
RcHm_v2.0_Chr7g0208481 Rosa chinensis HOM05D000003 ORTHO05D000004 4.7e-06 55.1 104 28.8
Aa31sc85G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.1e-06 54.7 107 29.9
CANSAT01G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-06 54.7 102 30.4
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-06 54.7 104 28.8
CANSAT64G0625 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-06 54.7 89 30.3
FvH4_6g33631 Fragaria vesca HOM05D000003 ORTHO05D004145 6.1e-06 54.7 99 29.3
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.1e-06 54.7 99 27.3
Sed0010093 Sechium edule HOM05D000003 ORTHO05D000004 6.1e-06 54.7 99 24.2
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 8.0e-06 54.3 103 28.2


User provided reference genes

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