Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 0.0e+00 2659.0 1321 100.0
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1247.6 1417 50.2
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 0.0e+00 1152.5 1267 52.9
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 0.0e+00 1124.4 1416 47.4
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 0.0e+00 1080.1 1415 46.4
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.5e-304 1049.3 1405 43.2
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 6.2e-303 1044.6 1403 44.0
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 1.0e-297 1027.3 1394 43.4
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 2.3e-297 1026.2 1397 43.2
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 2.1e-295 1019.6 1435 43.9
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 4.0e-294 1015.4 1327 47.1
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 9.0e-294 1014.2 1408 45.2
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 9.0e-294 1014.2 1431 42.3
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 7.9e-290 1001.1 1407 44.0
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 3.0e-289 999.2 1450 41.9
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 8.1e-287 991.1 1408 43.1
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 4.0e-286 988.8 1416 42.8
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 4.8e-279 965.3 1416 42.9
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 6.5e-276 954.9 1429 41.7
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.7e-273 944.9 1407 42.1
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 7.4e-272 941.4 1367 41.1
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 1.8e-270 936.8 1414 41.2
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 3.0e-265 919.5 1391 40.3
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.5e-264 917.1 1346 42.3
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.2e-261 907.5 1392 41.2
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.2e-259 899.4 1402 40.5
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.9e-258 894.8 1433 40.2
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 7.4e-256 888.3 1398 40.8
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 2.2e-255 886.7 1391 40.9
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.4e-254 883.2 1388 40.0
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 9.1e-254 881.3 1419 39.0
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.6e-250 870.5 1394 39.7
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 2.3e-249 866.7 1433 39.1
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 3.9e-249 865.9 1420 39.5
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 1.2e-245 854.4 1405 38.5
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 4.0e-241 839.3 1340 39.6
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 9.7e-240 834.7 1426 37.7
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 3.5e-237 826.2 1399 39.0
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.6e-234 817.4 1376 38.1
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 9.8e-232 808.1 1419 36.9
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.7e-223 780.8 1385 37.5
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.8e-222 777.3 1389 37.7
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 7.0e-222 775.4 1385 37.7
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 8.6e-220 768.5 1429 37.1
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.2e-218 764.6 1147 41.4
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.8e-217 760.8 1396 36.8
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 3.2e-214 750.0 1404 37.0
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 4.1e-214 749.6 1175 40.0
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.0e-213 747.3 1415 37.1
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 3.9e-212 743.0 1439 34.7
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.9e-211 740.7 1383 36.3
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.1e-210 737.3 1194 38.9
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.3e-209 733.8 1387 36.3
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.6e-208 730.3 1295 37.2
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 9.8e-208 728.4 1362 36.2
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 2.9e-207 726.9 1394 36.3
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 6.4e-207 725.7 1389 35.3
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 1.2e-205 721.5 1394 36.2
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 8.6e-204 715.3 1371 36.1
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 6.8e-201 705.7 1400 35.2
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.1e-193 681.8 1224 37.4
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 1.1e-190 671.8 1366 35.2
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 2.1e-189 667.5 1365 34.9
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 7.8e-189 665.6 1357 35.6
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.3e-188 664.1 1358 35.1
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 1.5e-187 661.4 1361 35.2
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 2.8e-186 657.1 1356 34.8
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 4.9e-183 646.4 1399 33.7
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.9e-180 636.7 1083 39.1
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.9e-179 634.4 1491 33.7
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 2.0e-176 624.4 1358 34.5
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 4.5e-176 623.2 1358 34.4
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 1.3e-175 621.7 1355 34.4
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 1.3e-175 621.7 1365 34.3
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.7e-175 621.3 1356 34.3
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 8.4e-175 619.0 1524 31.8
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 2.4e-174 617.5 1362 34.3
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 9.3e-158 562.4 1375 31.8
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.6e-157 561.6 1357 31.8
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 4.6e-157 560.1 1208 35.3
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.5e-155 555.1 813 42.9
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 7.2e-150 536.2 812 41.0
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 1.1e-145 522.3 1028 35.4
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.6e-139 501.1 883 35.3
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 1.4e-137 495.4 1378 30.3
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 5.9e-136 490.0 984 35.5
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.7e-98 365.5 432 46.8
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.2e-93 349.4 439 45.8
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 8.0e-93 346.7 400 48.2
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 3.4e-91 341.3 468 42.9
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 5.1e-87 327.4 513 43.1
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.4e-81 309.3 291 56.4
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 3.5e-80 304.7 625 35.8
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 3.9e-79 301.2 871 31.5
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 8.6e-79 300.1 374 46.3
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 5.6e-78 297.4 1296 25.8
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.6e-70 270.8 265 53.6
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.1e-69 268.9 269 50.6
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 9.9e-67 260.0 459 37.0
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.7e-63 246.9 291 49.1
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 9.6e-62 243.4 371 39.6
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.6e-59 235.3 249 50.6
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.1e-57 229.9 407 38.3
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 2.7e-56 225.3 570 33.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 1.1e-52 213.4 809 26.1
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.3e-46 191.4 201 50.7
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 5.3e-44 184.5 653 26.3
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 6.9e-44 184.1 265 37.7
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 2.3e-39 169.1 339 34.8
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 5.7e-38 164.5 597 27.0
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.4e-36 159.1 208 42.3
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 6.1e-32 144.4 179 43.6
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.3e-31 142.5 210 37.1
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.8e-28 132.9 195 39.5
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 1.9e-25 122.9 402 28.1
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 4.2e-25 121.7 609 23.5
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.2e-24 120.2 78 73.1
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 4.7e-24 118.2 157 39.5
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 5.1e-23 114.8 243 32.5
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.5e-19 103.2 293 30.0
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.9e-18 99.0 288 29.2
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 1.9e-17 96.3 235 32.3
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 4.8e-13 81.6 56 75.0
unitig_19.g30006 Utricularia gibba HOM05D006182 ORTHO05D007236 2.6e-11 75.9 116 39.7
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 5.9e-11 74.7 79 50.6
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 5.0e-10 71.6 51 74.5
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 6.5e-10 71.2 66 50.0
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 3.0e-07 62.4 69 43.5


User provided reference genes

Program Settings