Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 5.0e-117 424.5 216 100.0
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.7e-96 356.3 239 79.1
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.2e-66 255.0 230 63.0
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.2e-66 255.0 230 63.0
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.2e-65 253.8 243 59.7
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 1.7e-64 250.0 245 59.2
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 7.0e-63 244.6 243 57.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 6.6e-61 238.0 231 58.9
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.1e-60 237.3 241 54.8
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 1.1e-60 237.3 234 58.1
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 1.9e-60 236.5 244 57.0
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 8.1e-59 231.1 231 57.6
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.1e-58 230.7 231 57.6
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.4e-58 230.3 229 56.8
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 4.0e-58 228.8 230 56.1
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.5e-57 226.9 231 56.3
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 3.4e-57 225.7 232 55.2
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 5.8e-57 224.9 227 57.7
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.7e-56 223.4 241 54.4
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 6.4e-56 221.5 236 54.7
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 8.3e-56 221.1 223 55.2
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 4.1e-55 218.8 227 55.5
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 4.1e-55 218.8 246 53.3
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.2e-54 217.2 233 55.4
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 2.7e-54 216.1 243 54.7
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 4.6e-54 215.3 239 53.1
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.3e-53 213.0 227 54.6
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 3.0e-53 212.6 243 52.3
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 5.1e-53 211.8 227 54.6
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 8.6e-53 211.1 266 49.2
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 2.5e-52 209.5 242 52.5
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 7.3e-52 208.0 227 53.3
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 2.1e-51 206.5 229 52.8
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 4.7e-51 205.3 245 51.4
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 5.2e-50 201.8 238 50.8
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 8.9e-50 201.1 224 50.9
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 8.9e-50 201.1 245 51.4
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 1.2e-49 200.7 249 48.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.2e-49 200.7 224 53.1
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 1.5e-49 200.3 232 50.0
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 2.0e-49 199.9 227 52.4
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.6e-49 199.5 230 51.7
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 3.4e-49 199.1 235 50.6
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 9.9e-49 197.6 219 51.1
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 9.9e-49 197.6 230 51.3
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 9.9e-49 197.6 210 54.8
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.8e-48 195.7 224 50.4
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.4e-48 194.9 224 50.0
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 1.4e-47 193.7 224 50.0
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 1.9e-47 193.4 248 48.4
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 2.4e-47 193.0 229 49.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 5.4e-47 191.8 233 50.2
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 9.2e-47 191.0 230 49.6
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.2e-46 190.7 245 48.2
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-46 190.7 225 50.2
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 2.1e-46 189.9 240 47.9
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 1.0e-45 187.6 229 48.9
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 2.3e-45 186.4 245 46.5
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 2.3e-45 186.4 266 45.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 5.1e-45 185.3 196 54.1
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 8.6e-45 184.5 241 48.5
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 5.6e-44 181.8 234 48.7
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 5.6e-44 181.8 231 50.2
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 2.1e-43 179.9 229 46.7
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 2.1e-43 179.9 231 49.4
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 6.2e-43 178.3 229 48.9
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.1e-42 177.6 229 47.2
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.1e-42 177.6 234 43.2
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.4e-42 177.2 218 51.4
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.4e-42 177.2 237 48.1
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 8.9e-42 174.5 229 45.9
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.5e-41 173.7 218 48.2
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 7.6e-41 171.4 215 50.7
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 2.2e-40 169.9 216 47.7
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 8.4e-40 167.9 229 46.7
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.4e-39 167.2 241 46.5
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.4e-39 166.4 237 45.1
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.4e-39 166.4 237 45.1
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 2.4e-39 166.4 231 45.9
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 5.4e-39 165.2 235 44.7
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 7.1e-39 164.9 237 46.8
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 2.3e-37 159.8 237 44.3
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 6.6e-37 158.3 183 50.8
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 1.1e-36 157.5 205 47.3
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.9e-36 156.8 233 44.6
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 2.5e-36 156.4 234 44.4
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 3.3e-36 156.0 175 52.6
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 1.8e-34 150.2 235 44.3
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.4e-34 149.8 234 41.9
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 2.4e-34 149.8 231 44.2
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 2.4e-34 149.8 189 49.7
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 4.0e-34 149.1 234 42.7
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 5.3e-34 148.7 231 43.7
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.5e-33 147.1 229 43.7
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 3.4e-33 146.0 250 40.4
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 3.4e-33 146.0 250 40.4
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 7.6e-33 144.8 233 40.3
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.3e-32 144.1 219 45.7
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 2.2e-32 143.3 132 56.1
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 6.4e-32 141.7 226 43.4
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 8.4e-32 141.4 246 39.8
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.9e-31 140.2 226 40.3
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 3.2e-31 139.4 216 43.1
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 3.2e-31 139.4 228 42.5
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 5.4e-31 138.7 201 44.8
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 1.6e-30 137.1 216 42.6
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.0e-29 134.4 153 50.3
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 3.0e-29 132.9 91 76.9
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 5.1e-29 132.1 229 39.3
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 5.8e-25 118.6 162 47.5
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 7.6e-25 118.2 71 83.1
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.3e-24 117.5 76 75.0
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 2.9e-24 116.3 76 76.3
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 8.4e-24 114.8 85 70.6
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 5.5e-23 112.1 298 31.9
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 7.1e-23 111.7 145 44.8
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.6e-22 110.5 153 43.8
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 4.3e-20 102.4 81 66.7
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 4.8e-19 99.0 120 45.8
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 1.8e-18 97.1 65 75.4
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 1.2e-17 94.4 120 46.7
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 1.5e-17 94.0 110 46.4
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.4e-15 87.4 63 69.8
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 3.2e-15 86.3 55 81.8
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.7e-14 83.2 130 41.5
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.6e-11 73.9 201 33.3
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 6.3e-11 72.0 62 56.5
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 9.0e-10 68.2 90 45.6
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 7.6e-09 65.1 111 35.1
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 4.2e-07 59.3 61 49.2
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 7.2e-07 58.5 122 36.1


User provided reference genes

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