Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1649.4 806 100.0
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1395.9 811 85.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1395.2 812 84.2
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 812 84.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 810 84.6
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 810 84.2
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1378.2 806 84.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 811 83.8
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 812 84.5
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1368.6 812 83.7
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 808 83.3
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 810 84.2
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 812 83.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1367.4 810 84.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 842 81.5
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 808 82.9
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 807 83.5
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 806 84.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1360.9 806 83.7
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1360.5 807 83.4
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 812 83.3
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 805 83.9
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 810 83.7
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1357.8 793 85.0
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 811 83.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 813 83.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 811 83.5
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1355.9 811 83.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1354.7 813 83.3
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1354.7 813 83.3
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1353.6 788 83.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 807 82.8
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 809 82.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 806 82.4
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 811 83.1
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 845 79.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 808 82.2
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 815 82.1
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1345.5 812 82.6
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 811 83.0
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 824 82.0
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 808 81.9
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 812 82.4
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 809 83.3
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 812 82.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 808 83.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1340.1 814 82.3
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 809 82.4
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1338.9 810 83.1
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 808 81.7
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 803 82.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 809 81.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 809 81.7
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 806 82.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 809 82.3
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 811 81.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 809 82.4
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 811 81.8
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1332.4 810 82.5
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 810 81.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 812 81.5
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 813 82.2
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 810 82.8
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 806 82.0
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 811 82.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1326.2 860 78.4
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1325.1 813 81.8
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 812 81.3
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 810 81.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 809 81.0
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 845 76.7
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 810 81.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 850 78.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 833 80.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 810 82.0
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 787 82.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 793 82.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1316.6 779 83.4
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 810 82.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 785 83.6
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 811 81.1
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1311.2 810 81.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 809 81.0
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 808 80.1
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 812 80.5
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 809 80.3
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 807 79.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 809 81.3
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 809 80.0
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 813 79.2
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 811 79.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 825 78.3
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 813 81.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 810 79.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 809 80.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 813 80.0
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 829 78.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 807 79.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 750 85.1
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 806 78.9
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 813 78.7
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 781 81.8
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 811 80.0
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 806 79.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 806 79.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 806 79.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 810 78.5
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 811 78.4
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 773 81.1
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 808 78.8
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 807 79.3
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 804 78.6
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 813 78.1
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 819 78.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 799 79.2
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 799 79.2
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 799 79.2
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 799 79.2
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 812 74.0
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 806 78.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 806 78.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 790 78.9
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 813 77.4
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 852 73.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1246.5 848 76.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1226.5 804 75.6
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1221.1 812 76.2
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 749 81.8
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 806 76.6
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1210.7 878 71.0
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1206.0 808 74.1
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 692 85.4
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1189.5 810 75.9
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1189.1 750 78.9
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 806 76.1
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 809 71.8
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1151.3 772 74.2
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1146.0 808 71.2
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1134.4 806 70.3
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1126.7 735 78.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1113.6 752 73.3
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1099.7 803 72.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.3e-292 1009.6 571 84.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 9.1e-273 943.7 627 70.8
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.3e-266 921.0 809 62.9
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 5.0e-263 911.4 512 85.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.6e-261 905.2 536 85.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.2e-253 880.2 541 78.9
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-184 651.0 708 53.7
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 5.0e-154 549.3 459 60.1
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.1e-136 490.7 297 80.1
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.1e-136 489.2 352 75.3
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.4e-126 456.4 318 75.2
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.8e-104 384.0 259 74.9
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.2e-100 370.5 397 54.4
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.6e-89 333.2 581 44.4
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.1e-59 235.0 153 77.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.2e-54 219.2 133 78.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 5.0e-45 187.2 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 6.5e-37 160.2 484 29.1
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 9.7e-33 146.4 468 28.4
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 7.0e-31 140.2 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.2e-29 135.2 458 27.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 8.0e-27 126.7 63 93.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 3.0e-26 124.8 430 27.4
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.3e-24 117.1 96 64.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.1e-23 114.8 478 27.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.4e-23 114.0 99 59.6
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 3.5e-22 111.3 61 83.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-16 91.7 220 32.3
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-16 90.9 266 27.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 9.2e-15 86.7 78 57.7
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 4.5e-14 84.3 161 36.6
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 2.0e-09 68.9 138 32.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-07 63.2 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 5.4e-07 60.8 38 76.3


User provided reference genes

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