Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1427.2 686 100.0
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1128.6 659 79.8
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1125.9 663 79.8
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1125.5 662 79.5
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1121.3 659 79.5
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1120.9 740 74.1
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1118.6 662 78.2
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1112.4 666 78.8
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1112.4 700 75.6
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1111.7 661 77.6
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1109.4 653 78.9
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1108.6 662 77.6
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 662 78.7
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1105.9 663 77.8
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1105.1 656 77.7
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1104.7 661 77.5
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1100.1 663 76.8
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1100.1 661 77.9
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1100.1 657 78.2
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 0.0e+00 1099.0 653 78.7
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 0.0e+00 1098.6 664 79.4
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 0.0e+00 1098.2 648 80.2
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1098.2 669 75.8
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 663 76.5
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1097.4 663 77.2
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 664 76.1
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 663 76.9
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1090.9 712 73.6
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 0.0e+00 1090.1 682 75.7
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1086.6 663 75.9
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1085.5 663 77.8
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 661 75.8
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 655 76.2
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1082.8 661 75.6
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1082.8 651 79.0
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1081.2 662 76.0
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1080.9 663 75.4
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 661 75.8
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 656 77.0
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1079.7 661 75.8
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1079.3 662 75.4
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1077.8 624 81.4
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 659 77.4
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1075.8 662 76.3
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1075.5 661 76.9
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 4.7e-312 1074.3 656 76.2
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 9.4e-312 1073.2 662 75.2
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 9.4e-312 1072.8 662 75.8
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.4e-311 1072.4 663 75.3
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 3.3e-311 1071.2 608 83.6
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 3.3e-311 1071.2 662 74.5
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 6.1e-310 1067.0 663 75.3
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 1.8e-309 1065.4 657 74.9
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 1.8e-309 1065.4 662 75.2
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 2.8e-307 1058.1 659 74.5
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 1.1e-306 1056.2 629 79.3
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 1.8e-306 1055.4 653 75.3
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 9.0e-306 1053.1 650 77.1
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 1.0e-304 1049.7 653 74.0
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 6.5e-304 1047.0 658 73.3
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 6.5e-304 1047.0 681 71.8
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 9.4e-303 1043.1 663 73.6
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 9.4e-303 1043.1 809 64.6
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 1.6e-302 1042.3 816 64.3
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 2.1e-302 1042.0 661 74.7
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 6.1e-302 1040.4 664 71.8
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 5.7e-300 1033.9 660 73.8
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 2.6e-297 1025.0 663 72.2
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.9e-296 1021.5 663 72.5
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 5.0e-296 1020.8 662 71.0
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 8.5e-296 1020.0 609 77.0
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 3.9e-293 1011.1 661 69.6
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 4.4e-292 1007.7 686 69.1
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 2.8e-291 1005.0 659 71.9
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 3.5e-289 998.0 659 69.0
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 5.0e-288 994.2 659 70.6
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.1e-287 993.0 659 70.9
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 2.5e-287 991.9 659 70.6
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 4.2e-287 991.1 659 70.6
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.7e-286 988.4 651 71.4
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 5.2e-285 984.2 658 70.2
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 5.2e-285 984.2 658 70.2
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 5.2e-285 984.2 658 70.2
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.0e-284 982.2 654 70.9
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 2.8e-283 978.4 659 68.4
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.5e-281 971.1 663 69.2
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 2.7e-278 961.8 603 75.3
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.3e-277 958.7 663 69.1
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.3e-263 911.8 609 69.0
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 9.5e-263 910.2 558 74.7
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.4e-261 906.4 650 68.0
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 7.0e-258 894.0 573 72.6
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 4.1e-250 868.2 590 68.5
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 9.8e-244 847.0 654 60.2
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 5.2e-237 824.7 648 59.7
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 3.9e-232 808.5 659 58.7
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 3.9e-216 755.4 514 71.4
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 2.7e-185 652.9 371 84.9
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 8.2e-182 641.3 378 75.9
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.1e-170 604.4 554 56.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.0e-168 597.8 370 77.8
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.9e-162 577.0 373 71.6
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 4.1e-133 479.6 554 46.9
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.2e-109 400.2 256 70.7
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 1.6e-84 318.2 746 31.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 6.9e-72 276.2 244 57.0
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 5.5e-69 266.5 167 73.1
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 7.4e-58 229.6 200 58.5
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.9e-25 120.6 70 72.9
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.2e-24 117.9 71 70.4
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 3.5e-23 114.4 65 73.8
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.1e-21 109.4 87 63.2
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.9e-21 108.6 92 59.8
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 2.5e-21 108.2 88 61.4
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.3e-21 107.8 70 67.1
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 8.0e-20 103.2 66 74.2
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 8.0e-20 103.2 66 74.2
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 8.0e-20 103.2 66 74.2
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 4.0e-19 100.9 64 68.8
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 3.7e-17 94.4 83 55.4
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 6.0e-15 87.0 52 67.3
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.0e-14 86.3 102 47.1
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 8.1e-12 76.6 99 47.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 1.4e-08 65.9 120 35.0
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 1.0e-06 59.7 64 46.9


User provided reference genes

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