Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.3e-123 446.4 228 100.0
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 2.9e-67 259.2 228 63.2
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 9.4e-66 254.2 229 59.8
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 4.8e-62 241.9 194 67.5
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 7.0e-61 238.0 247 56.7
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.5e-60 236.9 235 56.6
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 4.5e-60 235.3 221 60.6
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 5.9e-60 235.0 235 57.0
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 2.2e-59 233.0 235 56.2
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 2.2e-59 233.0 235 56.6
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 2.9e-59 232.6 235 56.2
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 1.1e-58 230.7 185 66.5
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.1e-57 226.5 222 57.2
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 2.1e-57 226.5 230 55.7
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 8.8e-56 221.1 246 52.0
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 2.6e-55 219.5 242 51.7
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 3.3e-55 219.2 215 56.3
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 4.4e-55 218.8 222 55.9
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 7.4e-55 218.0 222 55.9
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 4.8e-54 215.3 225 54.2
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 5.3e-53 211.8 228 54.4
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 2.9e-51 206.1 223 53.8
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 3.8e-51 205.7 175 62.3
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.2e-49 200.7 202 55.9
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 1.6e-49 200.3 225 51.1
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.1e-49 199.9 181 59.7
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 8.0e-49 198.0 180 60.6
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 1.5e-47 193.7 237 51.1
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 3.4e-47 192.6 177 59.3
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 4.4e-47 192.2 174 60.9
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 5.7e-47 191.8 176 59.1
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 7.5e-47 191.4 182 54.4
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 9.8e-47 191.0 179 58.7
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.3e-46 190.7 181 58.0
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.3e-46 190.7 181 58.0
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.8e-46 189.5 179 58.1
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 2.0e-44 183.3 169 58.0
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 7.7e-44 181.4 180 57.2
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 5.5e-42 175.3 191 50.8
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 7.2e-42 174.9 263 43.3
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 9.4e-42 174.5 205 52.7
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 2.1e-41 173.3 211 47.4
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.0e-40 171.0 201 47.8
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 1.8e-40 170.2 177 54.2
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 3.0e-40 169.5 193 51.3
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 5.2e-40 168.7 209 47.4
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 8.8e-40 167.9 212 46.7
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.5e-39 167.2 215 46.0
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.6e-39 166.4 193 50.3
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.4e-39 166.0 193 50.3
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 5.7e-39 165.2 193 50.3
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 9.8e-39 164.5 227 41.0
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.3e-38 164.1 214 45.3
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.3e-38 164.1 224 45.5
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.7e-38 163.7 174 52.3
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 2.2e-38 163.3 201 45.8
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 4.9e-38 162.2 174 50.0
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 1.1e-37 161.0 181 50.8
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 2.4e-37 159.8 163 52.8
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 2.0e-36 156.8 184 48.4
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 1.3e-35 154.1 213 42.7
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 1.9e-34 150.2 171 48.5
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 2.5e-34 149.8 180 45.0
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 3.3e-34 149.4 149 56.4
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 3.3e-34 149.4 170 51.2
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 7.2e-34 148.3 222 44.1
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.2e-33 147.5 178 46.1
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 2.1e-33 146.7 130 58.5
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 2.1e-33 146.7 180 45.0
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 2.8e-33 146.4 144 54.2
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 2.8e-33 146.4 218 39.9
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 4.7e-33 145.6 207 41.5
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 4.7e-33 145.6 138 53.6
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 2.3e-32 143.3 135 52.6
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 4.0e-32 142.5 141 53.9
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 6.8e-32 141.7 179 43.0
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 1.2e-31 141.0 138 52.2
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 1.2e-31 141.0 212 41.0
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.5e-31 140.6 139 51.1
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 2.0e-31 140.2 138 51.4
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 2.0e-31 140.2 138 51.4
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 5.7e-31 138.7 160 53.1
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 5.7e-31 138.7 133 51.1
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 7.5e-31 138.3 176 43.8
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 9.8e-31 137.9 160 48.8
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 1.3e-30 137.5 138 51.4
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 1.7e-30 137.1 138 52.2
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 2.2e-30 136.7 134 53.7
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 2.2e-30 136.7 134 53.7
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 2.2e-30 136.7 134 53.7
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.4e-29 134.0 162 48.1
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 1.8e-29 133.7 220 40.9
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 3.2e-29 132.9 166 48.8
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 4.1e-29 132.5 239 38.5
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 1.2e-28 131.0 179 44.7
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.6e-28 130.6 215 37.2
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 3.5e-28 129.4 237 35.9
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 4.6e-28 129.0 183 41.5
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 5.9e-28 128.6 175 43.4
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 2.3e-27 126.7 182 44.5
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 3.9e-27 125.9 239 37.2
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.5e-26 124.0 119 58.0
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.5e-26 124.0 235 35.3
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.9e-26 123.6 184 42.9
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 2.5e-26 123.2 179 45.3
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 5.6e-26 122.1 180 42.2
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 1.2e-25 120.9 182 41.2
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 4.7e-25 119.0 134 50.0
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 8.0e-25 118.2 149 47.0
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 2.3e-24 116.7 142 45.1
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.0e-23 113.6 212 39.2
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 3.7e-22 109.4 194 38.1
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.8e-16 90.5 182 37.4
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.8e-15 85.5 158 41.8
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 1.0e-11 74.7 199 33.2
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.7e-11 73.9 129 34.9
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 8.6e-11 71.6 121 38.8
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 3.6e-09 66.2 78 44.9
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 3.6e-09 66.2 196 28.1
CBR_g25863 Chara braunii HOM05D005945 ORTHO05D006749 2.2e-06 57.0 158 28.5


User provided reference genes

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