Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 5.9e-49 197.2 99 100.0
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 9.1e-42 173.3 95 87.4
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.2e-41 172.9 95 87.4
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.7e-41 171.8 95 86.3
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.5e-41 171.4 95 87.4
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.5e-41 171.0 95 86.3
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 5.9e-41 170.6 95 86.3
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 7.7e-41 170.2 95 87.4
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.0e-40 169.9 95 86.3
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.0e-40 169.9 95 86.3
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.0e-40 169.9 95 83.2
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.3e-40 169.5 95 86.3
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.7e-40 169.1 95 84.2
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.3e-40 168.7 95 85.3
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.3e-40 168.7 95 85.3
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 2.9e-40 168.3 95 86.3
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.0e-40 167.5 95 84.2
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 6.5e-40 167.2 95 83.2
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 8.6e-40 166.8 95 85.3
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.1e-39 166.4 95 83.2
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.1e-39 166.4 95 84.2
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 2.5e-39 165.2 95 83.2
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.2e-39 164.9 95 83.2
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 3.2e-39 164.9 95 83.2
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 4.2e-39 164.5 95 81.1
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 4.2e-39 164.5 95 80.0
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 4.2e-39 164.5 95 83.2
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 5.5e-39 164.1 95 81.1
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 5.5e-39 164.1 95 83.2
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 9.5e-39 163.3 95 82.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 9.5e-39 163.3 95 83.2
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 9.5e-39 163.3 95 81.1
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.2e-38 162.9 95 85.3
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.2e-38 162.9 95 82.1
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.2e-38 162.9 95 78.9
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.6e-38 162.5 95 80.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.1e-38 162.2 95 81.1
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.1e-38 162.2 95 84.2
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.1e-38 162.2 95 83.2
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.1e-38 162.2 95 84.2
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 2.1e-38 162.2 95 81.1
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.8e-38 161.8 95 84.2
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 3.6e-38 161.4 95 81.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 4.7e-38 161.0 95 84.2
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 4.7e-38 161.0 95 82.1
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 6.1e-38 160.6 95 84.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 8.0e-38 160.2 95 81.1
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 8.0e-38 160.2 95 80.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.0e-37 159.8 95 77.9
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.0e-37 159.8 95 82.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.4e-37 159.5 95 80.0
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.8e-37 159.1 95 84.2
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.3e-37 158.7 95 77.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 2.3e-37 158.7 95 78.9
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 2.3e-37 158.7 95 81.1
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 4.0e-37 157.9 95 78.9
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.0e-37 157.9 100 79.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 8.8e-37 156.8 95 77.9
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.2e-36 156.4 95 78.9
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.2e-36 156.4 95 78.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.5e-36 156.0 95 78.9
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.5e-36 156.0 95 78.9
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.5e-36 156.0 95 76.8
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.6e-36 155.2 95 77.9
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 3.4e-36 154.8 95 78.9
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.4e-36 154.8 95 78.9
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 3.4e-36 154.8 95 76.8
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 4.4e-36 154.5 95 77.9
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 4.4e-36 154.5 95 78.9
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.4e-36 154.5 95 78.9
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 7.5e-36 153.7 95 76.8
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 7.5e-36 153.7 95 77.9
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 7.5e-36 153.7 95 77.9
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 7.5e-36 153.7 95 76.8
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 9.8e-36 153.3 95 76.8
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 9.8e-36 153.3 95 76.8
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.7e-35 152.5 95 77.9
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.7e-35 152.5 104 75.0
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.8e-35 151.8 95 76.8
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 3.7e-35 151.4 95 74.7
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.7e-35 151.4 95 75.8
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.7e-35 151.4 95 75.8
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.7e-35 151.4 95 76.8
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.7e-35 151.4 95 76.8
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.9e-35 151.0 95 74.7
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 4.9e-35 151.0 95 76.8
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 4.9e-35 151.0 95 75.8
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 4.9e-35 151.0 95 76.8
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 6.3e-35 150.6 95 75.8
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 8.3e-35 150.2 95 74.7
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.4e-34 149.4 95 73.7
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.4e-34 148.7 95 73.7
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.4e-34 148.7 100 69.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 4.1e-34 147.9 95 73.7
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 9.2e-34 146.7 95 70.5
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.0e-33 145.6 95 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.5e-33 144.8 95 69.5
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 3.5e-33 144.8 95 72.6
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.0e-32 143.3 95 76.8
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.5e-31 139.4 95 69.5
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.8e-29 132.5 76 82.9
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.8e-29 132.5 76 85.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 4.0e-29 131.3 95 70.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.6e-28 128.6 95 65.3
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 4.4e-28 127.9 95 58.9
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.7e-27 125.9 95 64.2
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 2.7e-25 118.6 95 64.2
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 6.6e-24 114.0 95 64.2
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.8e-22 108.6 95 60.0
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.4e-21 106.3 98 52.0
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.8e-21 105.9 94 51.1
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 2.6e-20 102.1 56 83.9
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-18 96.7 59 78.0
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.4e-18 96.3 53 86.8
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.4e-18 96.3 52 88.5
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.4e-18 96.3 59 78.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 5.4e-18 94.4 56 78.6
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 4.6e-17 91.3 95 51.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.3e-15 85.1 56 69.6
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 5.6e-15 84.3 53 75.5
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 5.2e-13 77.8 95 42.1
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 5.2e-13 77.8 95 42.1
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.0e-08 63.5 39 74.4
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 8.6e-08 60.5 80 46.2
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.3e-07 58.2 33 78.8


User provided reference genes

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