Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.3e-117 424.1 211 100.0
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 5.8e-62 241.5 212 64.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 9.9e-62 240.7 127 93.7
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.3e-61 240.4 127 92.9
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.9e-61 239.2 127 89.8
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 4.9e-61 238.4 127 89.8
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.1e-60 237.3 127 92.1
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.4e-60 236.9 127 91.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-60 236.5 127 90.6
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.9e-60 236.5 127 89.8
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 2.4e-60 236.1 129 89.1
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 9.3e-60 234.2 127 89.8
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.2e-59 233.8 127 87.4
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.6e-59 233.4 127 89.8
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.6e-59 233.4 127 89.8
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.6e-59 233.4 127 89.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.7e-59 232.6 127 89.0
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.7e-59 232.6 127 88.2
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 3.5e-59 232.3 127 88.2
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.0e-59 231.5 127 88.2
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 6.0e-59 231.5 127 88.2
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 7.9e-59 231.1 127 88.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.9e-59 231.1 127 88.2
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 7.9e-59 231.1 180 69.4
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.9e-59 231.1 211 63.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.0e-58 230.7 127 85.8
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.8e-58 229.9 127 88.2
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.8e-58 229.9 127 87.4
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.8e-58 229.9 127 87.4
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 2.3e-58 229.6 127 85.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.3e-58 229.6 127 85.8
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 5.1e-58 228.4 127 85.8
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 5.1e-58 228.4 214 59.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.1e-58 228.4 127 85.0
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 6.7e-58 228.0 132 84.8
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 8.7e-58 227.6 127 87.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 8.7e-58 227.6 127 84.3
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.1e-57 227.3 127 86.6
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.1e-57 227.3 127 87.4
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.5e-57 226.9 127 86.6
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.5e-57 226.1 127 85.8
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.5e-57 226.1 132 82.6
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 4.3e-57 225.3 194 64.4
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 7.4e-57 224.6 127 82.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 7.4e-57 224.6 127 85.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 7.4e-57 224.6 220 57.3
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 9.6e-57 224.2 131 83.2
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 9.6e-57 224.2 127 86.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 9.6e-57 224.2 127 85.8
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 9.6e-57 224.2 127 84.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.3e-56 223.8 127 83.5
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.3e-56 223.8 127 84.3
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.6e-56 223.4 127 85.8
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.6e-56 223.4 127 84.3
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.1e-56 223.0 127 83.5
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.7e-56 222.2 128 81.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.7e-56 222.2 127 85.8
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.8e-56 221.9 127 85.8
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 6.2e-56 221.5 129 84.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 8.1e-56 221.1 127 85.8
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.1e-55 220.7 127 81.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.4e-55 220.3 211 57.8
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.8e-55 219.9 127 80.3
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.8e-55 219.9 127 81.9
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.8e-55 219.9 127 80.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-55 219.9 205 58.5
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-55 219.9 195 60.5
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.8e-55 219.9 127 80.3
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.8e-55 219.9 205 58.5
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.4e-55 219.5 127 80.3
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.4e-55 219.5 127 81.9
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.4e-55 219.5 127 82.7
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.1e-55 219.2 127 82.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.1e-55 219.2 127 80.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 3.1e-55 219.2 127 80.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.1e-55 219.2 127 80.3
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.0e-55 218.8 127 81.9
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.0e-55 218.8 127 81.9
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 5.3e-55 218.4 202 59.4
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.3e-55 218.4 127 80.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 5.3e-55 218.4 127 82.7
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 5.3e-55 218.4 127 81.9
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 5.3e-55 218.4 198 64.1
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 6.9e-55 218.0 127 80.3
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 9.0e-55 217.6 204 58.8
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 9.0e-55 217.6 223 57.8
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.2e-54 217.2 127 81.9
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.2e-54 217.2 127 82.7
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.5e-54 216.9 127 79.5
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.5e-54 216.9 127 81.1
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.0e-54 216.5 129 80.6
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.6e-54 216.1 127 81.9
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 4.5e-54 215.3 127 80.3
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 7.6e-54 214.5 127 80.3
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 7.6e-54 214.5 126 82.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.7e-53 213.4 126 81.7
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 4.9e-53 211.8 127 78.7
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.4e-52 210.3 127 78.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.9e-52 209.9 127 76.4
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-52 209.5 127 75.6
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.5e-52 209.5 127 75.6
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.2e-52 209.1 127 75.6
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.2e-52 208.8 220 52.7
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.5e-52 208.4 127 74.8
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 5.5e-52 208.4 223 52.0
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 7.1e-52 208.0 128 75.0
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.3e-52 207.6 127 75.6
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 9.3e-52 207.6 127 78.7
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 9.3e-52 207.6 127 78.0
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.6e-51 206.8 127 74.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 2.1e-51 206.5 228 53.9
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.7e-51 206.1 127 77.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.7e-51 206.1 127 74.8
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 3.5e-51 205.7 127 77.2
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.5e-51 205.7 127 76.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 4.6e-51 205.3 127 77.2
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.9e-51 204.5 127 74.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 7.9e-51 204.5 127 74.0
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.0e-50 204.1 222 52.3
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.8e-50 203.4 126 76.2
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.8e-50 203.4 127 78.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.3e-50 203.0 228 52.6
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.3e-50 203.0 127 76.4
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 8.7e-50 201.1 130 80.0
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.5e-49 200.3 127 74.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.3e-49 198.7 127 74.8
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 7.4e-49 198.0 191 54.5
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 2.1e-48 196.4 127 72.4
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 3.7e-48 195.7 143 68.5
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.4e-47 193.0 127 71.7
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.3e-45 187.2 222 48.6
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.0e-42 176.0 127 63.0
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.9e-42 175.6 107 81.3
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.1e-42 175.3 113 75.2
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.7e-40 169.1 209 47.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.4e-39 167.2 127 59.1
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.1e-39 166.0 95 84.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 4.1e-39 165.6 96 82.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.9e-39 164.9 111 73.0
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.2e-38 164.1 92 87.0
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.4e-38 162.5 95 77.9
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.4e-38 162.5 95 82.1
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 6.5e-37 158.3 177 56.5
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 9.4e-36 154.5 90 82.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 6.1e-35 151.8 74 100.0
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-33 147.1 77 92.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.8e-32 142.9 127 49.6
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-31 141.0 91 72.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.5e-30 135.6 128 50.0
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-26 124.0 66 89.4
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 5.7e-25 118.6 74 78.4
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-24 117.5 66 89.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 2.2e-24 116.7 65 86.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.8e-24 115.5 101 62.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.2e-22 110.9 72 77.8
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.7e-22 108.2 116 55.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.7e-22 108.2 101 59.4
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 4.7e-19 99.0 68 63.2
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-18 97.1 66 63.6
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.3e-16 90.9 92 46.7
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-16 90.1 71 60.6
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 6.3e-16 88.6 125 48.8
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 4.5e-14 82.4 52 73.1
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 7.7e-14 81.6 42 88.1
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-13 81.3 42 85.7
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 3.6e-11 72.8 36 91.7
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.0e-10 69.7 37 86.5
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-08 62.8 33 87.9
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 9.1e-07 58.2 32 84.4
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 2.0e-06 57.0 56 44.6
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.0e-06 57.0 67 50.7


User provided reference genes

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