Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.8e-276 955.3 485 100.0
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.2e-196 688.7 472 74.8
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.2e-196 688.7 456 75.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.5e-195 685.3 493 71.4
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-194 683.3 483 72.7
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.9e-194 681.8 462 74.7
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 5.1e-194 681.4 482 71.8
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.3e-193 678.7 469 72.9
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 6.8e-191 671.0 482 70.1
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 4.4e-190 668.3 465 74.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-189 666.8 481 71.3
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.7e-189 666.4 488 71.1
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 6.4e-189 664.5 479 72.0
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.9e-188 662.9 492 69.5
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 4.1e-188 661.8 466 73.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.4e-188 661.4 470 70.6
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.6e-187 659.8 479 68.9
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.1e-187 659.4 463 71.3
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 7.8e-187 657.5 471 70.3
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.8e-187 657.5 471 70.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.8e-187 657.5 504 69.4
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 7.8e-187 657.5 471 71.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.3e-186 656.8 474 71.5
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.7e-186 656.4 470 70.2
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.7e-186 656.4 477 70.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.1e-186 654.8 483 68.5
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 5.1e-186 654.8 492 69.3
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 6.6e-186 654.4 483 67.9
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.6e-186 654.1 487 69.4
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.5e-185 652.5 473 70.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.5e-185 652.5 487 69.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.3e-185 651.7 487 69.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.3e-185 651.7 464 72.6
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 7.3e-185 651.0 465 71.0
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 7.3e-185 651.0 507 67.9
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.8e-184 649.0 484 69.0
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 2.8e-184 649.0 490 67.8
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 4.7e-184 648.3 468 70.5
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 8.1e-184 647.5 444 72.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 8.1e-184 647.5 466 70.6
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.1e-183 647.1 483 70.4
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.1e-183 647.1 456 71.3
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.8e-183 646.4 501 67.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 1.8e-183 646.4 492 67.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.6e-182 642.5 484 67.6
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.6e-182 642.5 489 67.9
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 9.9e-182 640.6 443 73.8
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.3e-181 640.2 493 66.9
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 2.2e-181 639.4 486 66.7
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-180 637.1 495 66.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.1e-180 637.1 456 71.7
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.9e-180 636.3 485 66.6
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 5.4e-180 634.8 468 69.9
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 3.5e-179 632.1 447 71.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 1.0e-178 630.6 466 67.6
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 2.3e-178 629.4 491 67.2
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 3.0e-178 629.0 471 66.9
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 5.1e-178 628.2 508 63.6
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 5.1e-178 628.2 475 67.6
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.5e-177 625.9 469 67.6
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.5e-177 625.9 457 69.6
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 2.5e-177 625.9 470 65.7
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 3.3e-177 625.5 467 68.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.6e-176 623.2 470 66.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.8e-176 622.5 469 66.5
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.8e-176 622.5 469 66.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.8e-176 621.7 466 69.5
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 4.0e-175 618.6 483 64.8
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 9.0e-175 617.5 483 65.0
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 9.0e-175 617.5 465 67.1
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.3e-173 613.6 469 67.0
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.2e-173 612.8 448 67.6
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.1e-172 610.5 469 66.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.1e-172 610.5 469 66.3
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.4e-172 610.1 447 67.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 2.4e-172 609.4 448 67.4
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.6e-171 606.7 448 67.4
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.7e-171 605.9 469 65.7
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 6.0e-171 604.7 462 66.0
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.9e-171 604.4 396 75.0
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 8.7e-170 600.9 486 64.2
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.7e-168 595.5 469 64.2
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 8.1e-168 594.3 480 63.5
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 3.1e-167 592.4 498 62.2
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.4e-166 589.0 496 60.9
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.3e-162 577.0 511 59.5
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 3.1e-159 565.8 454 65.2
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.0e-158 563.1 484 62.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.5e-156 556.2 411 66.9
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 9.3e-156 554.3 407 66.8
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 8.2e-152 541.2 535 56.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.9e-151 538.1 464 60.8
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 4.5e-150 535.4 497 56.3
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.9e-149 532.7 489 59.1
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.2e-147 527.3 487 57.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.9e-147 524.6 466 62.9
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 3.9e-146 522.3 375 68.8
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 8.7e-146 521.2 394 69.3
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.6e-142 509.6 403 64.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 5.9e-142 508.4 471 57.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.0e-137 493.4 458 59.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 9.1e-127 458.0 468 51.9
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 5.9e-126 455.3 355 67.0
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.7e-123 446.4 471 49.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 9.5e-108 394.8 261 73.2
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.9e-104 382.5 229 81.2
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 6.6e-93 345.5 293 64.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.6e-92 342.4 254 65.0
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.6e-92 342.4 254 65.0
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 5.2e-90 335.9 200 80.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.5e-89 334.3 201 79.6
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.2e-87 326.6 244 66.4
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 9.5e-84 315.1 320 49.7
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 4.9e-80 302.8 342 48.2
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.9e-79 300.8 325 48.0
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-79 300.4 219 70.8
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.7e-78 297.0 226 69.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 2.1e-75 287.3 263 58.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.6e-75 286.6 223 66.8
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 3.1e-74 283.5 186 73.7
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 2.2e-72 277.3 173 76.3
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.4e-71 272.7 218 64.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.9e-68 264.2 183 72.1
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.3e-68 263.1 245 56.3
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.2e-57 228.4 171 67.3
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 6.4e-56 222.6 157 71.3
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.0e-53 213.8 154 64.9
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-40 172.2 165 60.6
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.2e-40 171.0 434 27.4
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-38 164.9 230 44.8
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.4e-34 151.8 510 30.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.9e-29 133.7 134 58.2
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-28 132.1 139 49.6
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.3e-27 128.6 144 49.3
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-24 117.9 100 59.0
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.8e-24 117.1 266 33.5
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 3.0e-21 107.5 55 90.9
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-18 99.0 61 78.7
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 7.4e-12 76.3 321 30.8
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 7.4e-12 76.3 150 35.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.8e-10 71.6 57 59.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.8e-10 71.6 74 51.4
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.4e-10 71.2 88 52.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.6e-09 67.8 69 59.4
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.8e-08 63.9 114 42.1


User provided reference genes

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