Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 9.4e-93 343.6 182 100.0
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 4.8e-73 278.1 182 81.3
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 6.3e-73 277.7 187 77.5
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 6.3e-73 277.7 174 82.8
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 6.3e-73 277.7 183 79.8
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 8.3e-73 277.3 182 79.1
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 8.3e-73 277.3 182 79.7
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.8e-72 276.2 182 79.1
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.8e-72 276.2 182 78.6
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 1.8e-72 276.2 182 78.0
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.4e-72 275.8 182 80.2
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 4.1e-72 275.0 183 79.2
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 4.1e-72 275.0 182 78.6
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 5.4e-72 274.6 178 82.0
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 7.0e-72 274.2 175 79.4
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 7.0e-72 274.2 182 78.0
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 9.1e-72 273.9 182 79.7
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 9.1e-72 273.9 182 77.5
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.2e-71 273.5 178 80.3
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 1.6e-71 273.1 176 81.8
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 1.6e-71 273.1 173 82.7
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 1.6e-71 273.1 173 82.7
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 3.5e-71 271.9 182 76.4
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 3.5e-71 271.9 176 80.1
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 3.5e-71 271.9 182 78.6
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 4.5e-71 271.6 175 79.4
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 4.5e-71 271.6 182 77.5
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 4.5e-71 271.6 182 77.5
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 7.7e-71 270.8 182 78.6
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 7.7e-71 270.8 181 79.0
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 7.7e-71 270.8 176 80.1
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 1.0e-70 270.4 182 78.6
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 1.0e-70 270.4 173 80.3
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 1.0e-70 270.4 181 79.0
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 1.3e-70 270.0 176 79.5
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.3e-70 270.0 182 76.4
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.3e-70 270.0 176 80.1
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.7e-70 269.6 176 79.5
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 3.8e-70 268.5 182 78.0
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 5.0e-70 268.1 182 77.5
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.5e-69 266.5 174 78.2
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 1.9e-69 266.2 182 76.4
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.5e-69 265.8 184 76.1
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.5e-69 265.8 182 75.3
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 2.5e-69 265.8 182 76.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 3.2e-69 265.4 173 79.8
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 3.2e-69 265.4 182 75.3
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 5.5e-69 264.6 174 77.6
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 5.5e-69 264.6 183 78.1
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 7.2e-69 264.2 182 75.3
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 9.4e-69 263.8 171 80.1
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 2.1e-68 262.7 182 74.7
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.1e-68 262.7 182 74.7
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.1e-68 262.7 182 74.7
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 2.1e-68 262.7 182 74.7
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 2.1e-68 262.7 177 78.5
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 4.7e-68 261.5 183 74.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 8.0e-68 260.8 176 76.7
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.0e-68 260.8 184 75.5
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 1.4e-67 260.0 182 75.3
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.4e-67 260.0 184 74.5
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.4e-67 260.0 182 74.2
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 1.8e-67 259.6 173 77.5
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 1.8e-67 259.6 183 75.4
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.3e-67 259.2 182 76.4
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 4.0e-67 258.5 178 77.0
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 5.2e-67 258.1 180 76.1
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 1.5e-66 256.5 182 75.3
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 1.5e-66 256.5 140 90.7
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 3.4e-66 255.4 174 75.3
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 4.4e-66 255.0 176 76.7
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 7.5e-66 254.2 161 81.4
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.3e-65 253.4 182 73.1
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.3e-65 253.4 140 91.4
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.3e-65 253.4 140 91.4
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 1.7e-65 253.1 173 75.7
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.7e-65 253.1 182 72.0
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 2.2e-65 252.7 182 73.6
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 6.3e-65 251.1 140 88.6
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 8.3e-65 250.8 182 72.5
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 8.3e-65 250.8 140 90.7
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 1.1e-64 250.4 181 73.5
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.4e-64 250.0 142 87.3
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 1.8e-64 249.6 184 73.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 2.4e-64 249.2 212 65.1
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 3.1e-64 248.8 148 83.8
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 4.1e-64 248.4 140 87.9
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 9.2e-64 247.3 145 84.8
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.6e-63 246.5 216 63.4
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.7e-63 245.7 174 71.3
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 2.7e-63 245.7 178 73.6
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 3.5e-63 245.4 182 71.4
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 4.5e-63 245.0 141 88.7
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 5.9e-63 244.6 140 85.7
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 7.7e-63 244.2 179 71.5
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.0e-62 243.8 141 85.1
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.3e-62 243.4 171 73.7
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 2.9e-62 242.3 171 74.3
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 8.6e-62 240.7 169 74.0
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 8.6e-62 240.7 183 71.6
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.6e-62 240.7 168 75.0
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 4.3e-61 238.4 142 83.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 1.2e-60 236.9 140 83.6
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.6e-60 236.5 148 80.4
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.1e-60 236.1 170 72.9
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.4e-59 233.4 165 72.7
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 4.0e-59 231.9 168 72.0
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 2.6e-58 229.2 167 72.5
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 9.8e-58 227.3 175 66.9
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 3.7e-57 225.3 174 67.8
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 8.3e-57 224.2 138 81.2
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.4e-56 222.6 173 65.9
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 4.1e-56 221.9 125 88.8
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.7e-54 216.5 139 77.7
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 8.6e-54 214.2 167 67.7
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 7.3e-53 211.1 147 75.5
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 4.4e-50 201.8 138 73.2
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 4.4e-50 201.8 137 73.0
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 1.9e-45 186.4 138 64.5
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 3.6e-44 182.2 174 60.9
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 1.2e-39 167.2 140 60.7
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 3.9e-38 162.2 122 70.5
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.5e-37 160.2 122 68.0
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.2e-36 157.1 122 68.0
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 1.2e-34 150.6 82 87.8
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.5e-34 150.2 129 62.0
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 7.6e-34 147.9 129 61.2
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.4e-33 144.8 129 59.7
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 8.4e-33 144.4 112 67.0
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 4.6e-31 138.7 163 52.1
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 7.8e-31 137.9 137 54.0
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 3.9e-30 135.6 101 66.3
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 3.3e-29 132.5 94 75.5
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 7.3e-29 131.3 143 46.9
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 2.1e-28 129.8 121 57.9
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 2.8e-28 129.4 106 66.0
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 1.1e-27 127.5 101 68.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.4e-27 127.1 119 63.9
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.2e-26 124.0 100 72.0
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.9e-25 118.6 104 67.3
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 8.4e-25 117.9 100 65.0
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 1.1e-24 117.5 92 67.4
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 7.1e-24 114.8 88 65.9
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-23 114.0 82 67.1
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.2e-23 114.0 91 69.2
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.2e-23 114.0 109 62.4
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 7.3e-21 104.8 70 72.9
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 1.3e-20 104.0 73 74.0
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 3.6e-20 102.4 145 49.0
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 6.2e-20 101.7 57 87.7
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.1e-19 100.9 71 74.6
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.4e-19 100.5 61 82.0
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 9.0e-19 97.8 69 68.1
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 1.4e-16 90.5 56 69.6
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 9.3e-16 87.8 126 42.1
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.8e-14 83.6 63 66.7
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 1.9e-13 80.1 66 63.6
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.8e-11 73.6 45 80.0
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.7e-09 67.0 58 63.8
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 8.4e-09 64.7 61 62.3
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.1e-08 64.3 44 72.7
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 4.2e-08 62.4 37 81.1
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 4.2e-08 62.4 86 46.5
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 9.3e-08 61.2 122 35.2
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 4.6e-07 58.9 57 59.6
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 4.6e-07 58.9 57 59.6
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 6.0e-07 58.5 30 90.0
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 2.3e-06 56.6 72 51.4
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 3.9e-06 55.8 112 32.1


User provided reference genes

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