Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.5e-182 642.9 356 100.0
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.1e-134 483.8 341 81.2
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 4.0e-132 475.3 340 81.5
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 3.4e-131 472.2 334 81.7
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 5.8e-131 471.5 336 80.7
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 5.8e-131 471.5 343 79.9
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 7.6e-131 471.1 337 79.8
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.9e-130 469.2 344 76.5
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.4e-129 466.8 340 80.6
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.2e-129 465.7 336 81.2
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 7.1e-129 464.5 342 77.8
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 9.3e-129 464.2 342 79.2
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.7e-128 462.6 325 83.4
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 2.7e-128 462.6 336 80.4
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.0e-127 460.7 348 77.9
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.0e-127 460.7 346 76.9
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.0e-127 460.7 337 78.0
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.3e-127 460.3 333 81.1
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 2.3e-127 459.5 335 80.3
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.7e-127 458.0 345 78.6
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 8.7e-127 457.6 343 79.0
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 8.7e-127 457.6 325 82.5
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.1e-126 457.2 331 80.4
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 3.3e-126 455.7 339 79.1
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.3e-125 453.8 336 78.6
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 8.2e-125 451.1 354 75.1
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 2.0e-123 446.4 346 75.4
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 2.6e-123 446.0 361 70.1
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.4e-123 445.7 344 74.7
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.0e-122 444.1 340 77.1
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 2.2e-122 443.0 327 79.2
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 2.9e-122 442.6 342 76.0
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 6.5e-122 441.4 343 76.7
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.4e-121 440.3 342 75.4
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 2.5e-121 439.5 339 77.9
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 5.5e-121 438.3 336 76.8
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 9.3e-121 437.6 338 75.4
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.1e-120 436.4 344 75.0
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.1e-120 436.4 344 75.0
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.7e-120 436.0 344 75.0
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 4.6e-120 435.3 337 77.2
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 6.1e-120 434.9 342 74.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.8e-119 433.3 344 74.1
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 3.9e-119 432.2 342 74.0
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 5.1e-119 431.8 333 77.2
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 9.7e-118 427.6 375 65.6
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.3e-117 427.2 343 73.5
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.6e-117 426.8 326 76.4
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 2.8e-117 426.0 329 75.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 3.7e-117 425.6 326 76.4
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.3e-116 421.8 315 77.8
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.0e-115 419.9 315 77.5
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.7e-114 416.8 336 73.8
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.7e-114 416.8 316 78.2
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.2e-114 416.4 344 72.1
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 6.5e-114 414.8 328 75.3
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 7.2e-113 411.4 328 75.6
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.6e-112 410.2 326 73.6
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 6.1e-112 408.3 340 74.4
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.4e-111 407.1 340 74.7
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.0e-111 406.0 325 72.9
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 3.9e-111 405.6 329 75.7
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 3.9e-111 405.6 322 76.7
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 6.7e-111 404.8 337 70.9
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 6.7e-111 404.8 349 71.1
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 4.3e-110 402.1 326 75.8
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 5.7e-110 401.7 351 71.8
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 7.4e-110 401.4 344 70.9
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 9.7e-110 401.0 337 73.6
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 6.3e-109 398.3 339 69.6
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.8e-108 396.7 328 75.9
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.8e-108 396.7 327 72.8
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 4.1e-108 395.6 328 75.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 5.3e-108 395.2 336 72.9
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 9.1e-108 394.4 337 73.6
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.6e-107 392.9 325 71.7
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 4.5e-107 392.1 329 75.7
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 4.5e-107 392.1 323 70.6
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.0e-106 391.0 329 75.4
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.0e-106 391.0 329 75.4
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.7e-106 390.2 342 71.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 2.2e-106 389.8 271 82.7
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.4e-105 387.1 317 75.7
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.4e-105 387.1 317 75.7
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.2e-104 384.0 312 72.8
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.1e-104 383.3 341 67.2
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.8e-103 380.2 323 70.3
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 6.7e-103 378.3 308 75.6
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 6.7e-103 378.3 340 66.8
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 8.8e-103 377.9 308 76.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.5e-102 377.1 337 68.5
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 9.7e-102 374.4 297 67.0
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 5.9e-99 365.2 332 67.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.5e-97 360.5 329 69.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.2e-96 357.5 266 71.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.4e-92 344.0 343 66.2
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 4.1e-92 342.4 321 65.7
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 2.7e-91 339.7 263 69.2
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.7e-91 338.2 337 64.1
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 8.5e-90 334.7 268 74.3
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 1.2e-83 314.3 262 71.8
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.9e-82 309.7 257 76.7
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 7.5e-78 295.0 312 62.5
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.6e-74 281.6 200 77.0
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.5e-70 270.8 228 65.8
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 8.6e-66 255.0 173 75.7
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 4.7e-56 222.6 217 65.9
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 6.2e-56 222.2 329 46.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.8e-54 214.9 323 48.6
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 3.7e-53 213.0 164 84.1
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.1e-52 209.5 240 49.6
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 2.1e-51 207.2 311 46.3
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.9e-49 200.7 228 50.0
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 7.3e-49 198.7 135 78.5
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.4e-44 184.5 185 65.4
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.9e-41 174.1 125 72.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 4.2e-36 156.4 250 39.6
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.3e-33 146.7 248 38.7
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 1.6e-32 144.4 118 81.4
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 4.9e-29 132.9 77 88.3
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.6e-25 119.4 149 57.0
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 7.9e-19 99.0 60 81.7
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 9.3e-12 75.5 167 37.1


User provided reference genes

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